Gene detail

Detailed information of PcrG026474.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_75:688428...705749
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG026474.mRNA1

ATGTCTTCCTCAAGAAGGCCAAGGCTTTGCACAGAATATTACCGAAAAGCTAAAGTGATTTCTACAAATACGCGAAGCTGCAGTTTGAAAAGGGACAAACCACGAAGAAAATGCAACACTGGAGACTCATCGATGAAAGAAAAAGACTGTGGAACGAAATTCAAGGAGGTTGAGAGAAAAACTGACATGTGTATAGATTCACCGCTGTCACGTTCATTGACAAGAAATGAACACACGAAAGCAAGTACAACACGAAGCCTTAATAATCACAAGAGATCTTGTAACCTTCTAAACTCAAATACAGATCAACATTCTGCTTTGGAGAGAGGCAATTTCAGTTGTTATATCAAAGCTGTTCCAGATGAAGTTTTGCTTCTGATCTGTTCCTACCTTCAGGAAAAAGAACTTTGTAGAATGGCACAGACATGTTCCAGACTCAACAGCATATGTCAGGATGGGTGTTTATGGCGATCACTTTACAGTCAAGTTTTTGACATGAAGAAGCCCATGATAAAAACATTTGAAGGTGTTTACATTGAAAAAGAACCAGAAGATGACTCATGCTGGAAAAAGTGTCTGAGTACACTTTATGATGCCCATCATGTTCACCCTGCTATAGCAAAACAGAAAAAAGTAAACCCTTGTCACTATACAGGGAGAAAAATAAATTATCATGAAACAATTAATGAGGCCCTGGAAGCTGTGTCAGATGAGGGTGTTATTATAGTACACAGTGGAGTGTATGATGAGCAGCTGTCAATCAGCAAGCCTGTCGCTATTATTGGAGCAGCTAAGAATGAAAGTAATGCAGTTGTCATTCAGTACAAGTCTTCAACAGTTGTCACTTTCAATCCTGGTTCAGCCTGCTCCTTCCTGGGACATCTGACATTAAAGAATTGTCCTGGAAGTGAATCTCAGGCTGTTAGATCAGGCTGTATAGAGGTTGTTGATGACTGCTCACCGACAATCTACAACTGCAAGCTCACTAGCCTAGCTAACGCTGGTGCAACAATGTATGTACACGGCAGAGGAGCAAGACCTACTTTGTCCAACTGTTTAATTTCTGACTCAGAAAATGTGGGTGTCTTCATCACAGATGGAGCTCAGGGAACATATGAAGACAGTGAGATTACAAACATCAAGCTAGCAGGTGTTTGGGTGAGAAACCATGCTAGTCCCATTATGAGGAGAAATAAAGTACACCACGGCAGAGATGTCGGCTTCTTTATCTTTGACTATGGTCTGGGTTATTATGAAGGGAATGACGTGTACAATAACCGCATTGCTGGTTTTGAGATTCGTTCTCATGCCAATCCAACAGTGGTTGGTTGTAAGATTCATCACGGCATGACAGGTGGCATCTATTGTCATGACGACGCGCGGGGTGAATTCCTTGAAAATAAGATTTATTCCAATACTTATGCTGGTGTCTGGATAACATCACAGAGCAATCCGACTGTAAAGAATAACGAGATCTACGACGGACAACAAGGAGGAGTTTACGTATTTGGTGAAGGAAAAGGATTGATCGAAGGCAACAATATTCACGACAATGCATTAGCTGGAATTCAGATCAGGACTAAAAGTAATCCAATCGTTCGATGCAACAGAATACACAGCGGACTTCACGGCGGAATATACGTGCATGAAGAAGGCATAGGACTCATAGAAGACAACGAAATCAACAACAACACACTGGCTGGTGTCTGGATAACAACAGGAAGTACACCAACCCTGAGAAACAACAGAATCCACAGTGGAAAACAGGTTGGCGTGTACTTTTATGACGGAGGCTGTGGAACTCTAGAGGAAAACGAAATTTTCAATCACAAGTACTCTGGGATACAGATAAGGTCTGGCAGTAACCCATGCATCAGAAGAAACAAGATTTGGGGAGGACAAAATGGCGGCGTCTTGGTCTACAATGGAGGCCTTGGTCTGCTAGAAGAAAACGAAATTTTTGATAATGCGATGGCGGGGGTCTGGATCAAGACCGAGAGTAACCCAGTCCTCCGGAGAAACAAGATTCACGACGGGCGAGAAGGCGGAGTGTGCGTGTTCAACTATGGAAAGGGTGTTCTGGAGAATAATGACATCTTTCGGAATGCACTGACAGGTGTTCTAATCAGTACAGCCAGTTTTCCGGTGTTAAAAAGTAATCGTATCTTTGATGGCGGTGCTGCGGGAATCGAGATAACAAACAGTGCTGGCGGAGTTCTGGAGGAAAATGAAGTCTTCAATAACCGGTTTGATGGGATTTGTCTGGCTACCGGTGTTGACCCTCAGCTTAGCAATAACAAAGTGCACGGAAACAAGCGTGAAGTGGAGAAGGCAATAGAGTCTTGCCGCTGTCTGTACCAAGTGTCTGGTAACACGTGCTATCCCATGCACGATTTCTACAGATGTACAACGTGTGGTACGTCAGAAGGTTACGCCATTTGCGTGAGTTGCGTGAAAGGATGTCACGAAGGACATGACGTGACGTTTGTCAGGCGTGACAGATTTTTCTGTGACTGCGGAGCTGGCTCAAGTGGAGTGCTGTGCAAATTAATAAGCGGAAACTGTTGGTCAGCGGCATCGTCTCGTACGCAAACAGTCAGAGTGGGCAGCGGTAATCAAACAGAAACAACTACGCAGGAGGAGATAGGGAACCGAGCAATTTACATTTCATGA

Transcript

PcrG026474.mRNA1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR006633 all species →	Domain	Carbohydrate-binding/sugar hydrolysis domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR047504 all species →	Domain	F-box only protein 11, UBR-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10297	FBXO11; F-box protein 11	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.