Gene detail

Detailed information of PcrG026809.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_79:2229310...2242111
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG026809.mRNA1

ATGAAACGACGCGACTACGGCGTTTTGCATCTGCTGTTGCTGGCGTTTATTCTACAGTTACTACTGCGAGTGGAAATGGTGTTTGGTAATAGCGAAATTCTTAACGTCATGAAAGCCGCTGAAGCGATAGAGGAAAGTCACCGCTCAAACTGCGCTTCGACTCGACGTGTTAAACGCCACGATCATGCTCGCTTTCCACAATCGCCGCCAACTGGATCTCAATTTGGAAAAGCAATGCGTTTCTTTGGTGGCGAAGTGGTTCGATTTACTGGGGCTGTCAAAATACCATCGCATCAGTTAACTATAGACTTCTGGATAAGGCCCGAAGGTGGTCAGGCATCGCCGGTCACTGTGATCGGACTGTTCGACGACTGTTCGCCCGACGCGAAAGATGGAGGTTGGGAAATTGGTCTTCAGGAAAGAAGTGCCGAGGAAAGCTTAAGAGTTTTCTTTCGACTGCGAACGCAACGATCGCATCACGACACGAAACTATTTTCAACGCGCCGCGTGGAACCAAACGTATGGCTTCATGTTGTAGCAACATTCAATGGCAAGGAAATGAAATTGTACATAAATCAAGCTGAAGTGGGAGTTTCTTCGGAGCAAAAAGGGCACATTTTCGCGGATGGCTTCGACTCGTGTGAACATTTAGAAGCTGGGGGAAATCGTTCGTCCGGGGTGTTCTATCGCGGCTTGATCGACGAGGTGCGCTTGTGGTCAATTGCAAAATCGCACCAAGAAATCAGCGCTAATGTCTTTGCTCCAATCACCGGTGTCAAGCCTGATGAGCATCTTGAAATGTATGAAAGTTTTGCGGGAAGTGAAGAACTCAATCGCAATCCGAAGACCACATGGGTCGTTGTCACTGCAAGTAAGAGACCGGAAATCACAGAGTCAACAATTCCAGGAGATCCACATGATCTTTCAATCCTCAAGCCCCCCTGTGGTACTACAGTTTGCGATAATCCAGAGATCATTAGAAGTTATGTGAAAAATACGCACTTGCGAGGCAAAAGGGTCGTCAGGTATCGTGTTGTCAACATATGGGATGACGATGGCACCAACCCTATGGTGACCAAAAAAGAGATAAAACTTCAACACGCCCAGCTCAATGACGCATTCAAACGATACAACATTACCTTTGAGCTGCATGAGAAGAACATATGGAGCACTTCCCTGAGGCGACGCACCGTCACCTACATGTGCGAGGCGGGAAAAATTGGCAACGGGTTTTGCGATCGCGAACATTGCATGCACGACATTACAGGCAACGATGGAGGAGACTGTGATAAATACAAAACCACATGTGACCTAAAAAAACTCGGGAATGGAAAGTGTGACCTTGAATGCAACAAAGACTACCACAAGTGGGATGGTGGGGACTGCTGCAATGAGAGCATCACCGATGTACATCAAACCTGTTTTGATCCTGCATCGCCAATCAGAGCCTACATGGGCGACAGGGAATACAAGAGTCTGGTGAATTTGGACAATCGAGATTTTTTGAACGTTTACTTGGCTCATTGGAGTAACGATAACCTTCAGGGCGTGGCTACGTTTCCCTGGGAGAAGTCCGTGCAGAGCATCTACGGTGGGACCATTTTGAGTCTGAAAAATTTTGGACGAAAACAGCACTTAAACGCTCTTGTTCACGAGTTTGGCCACATGTTAGGCTTGTGGCACGTGCATCACGGCGTGACGGAGATGGATTGCACAGATGACTGTGCAGAGAATTTTCCGTCGCTCGAGTTGGGTGACCTGTGTTCGGATACGAATCCTACCCCAGCTAATAGCAAGTGCAGTGATCCTGTTTCTAGTAAGACTGGCAAGATTTGCGGAGTCAAGAAATTCACGAACACGCCTTTCACCAACTACATGAGTTACGCTAACGACTCTTGCACTGACCAGTTCACTGAACAACAGGTAGCACGAATGCATTGCTACATTGATCTGATTCACCAGTCATGGCAGGGGACAGAGACTCCACCTTCCTTCATCCCGCTTCCACCACGCGTGACTTCTAAATCGGAGAAAAGTGTCAAACTTGCCTGGATCCCGCCTCTAGGTACTGGAGGAGGAAACGCGCTCAACGGCTGCCACGAATGCCGCGAGGACAGAGTGTTCCAGCAGTACGCTATTACAGCGGAATCTCCCAATCCGGGCAAGCCCAATGGCTACTGGGCTCCTCACCAGGCCATAGGAGCCCCTGACGCGGATCCGTGTAACATGACACCCATTGGCTGGTCTCCCCACACAATTTACAGTACGGATTACTGCTCGGGGTGTTACATCGAGTTTGGATTCAAGGAAGCTGTTATTCCAACTAGTCTGAGCTTGTGGGTGGTATTCGCATCCAAAGATGGAATCAGCGACATCCAGCTTATCTTCACGGACGGGTCAGAGCTGTCGCTAGGCAGTGCGACCGCTCAATGTGACGTACCCCTGACCATGACTTTGAGAGTCAGAAAGAAGGTTGCCAAGGTTCGAGTTCACGTGAAGAATGTTTCAATTGTTATTGATGCTATCCAGTTGACTTCCTCTGTAAACCACCCAAACTGCTACAAGTGTGAACCCATGGAATACCTTGTGACCAGAGCGCCACCGTTTCCAACTGGAAAGACAGAACGTGTAAAGACCACACAGTTTACAGACAGGTACTTGGAACCCGGAAAGCCGTACACCTACACAGTCCAAGCTGTGACAAGTCTGGGACTCGAGGGCCCTCCATCACCACCCCTACACTACTCACCAGAGCAAGGCTTTTGTGGCGACGGTACAGTGGATCCCAGTATTGGAGAGGAATGCGATGACGGCAACGTCAGAGACGCGGACGGCTGTAACATGCAATGCAAGAAAGAGGACGTCTATCACTGCGTGGGTCATCCAAGTTTGTGCTACCGCCACGACGGAGACGGAAAATGTGAAGATTTTGAGAAGAAAACCAGCATCAAAGACTGTGGATTTTACACGCCAGAAGGTTTTGAAGATCAGTGGGCTGTGAATGTGACAGTAAACCCGGATCACCTTGATAGAAAGTGCCCTGAAAACGTGGTCCTTGGACCTCCACCACTGGACCTGGTTTGCCAATCCTCTTTTGATGACCAGTCAAATAACGCGTGGGGTCCCTGTAAACATAAATTCACGGATGACAATTACTGGCTAGAGGTCACGTTCAACCGCTCTGTCGTTCCAGCGGCAGTGGTTCTTTATATCGGCTCTGATGGCAAAAAAGACGGTCGCCTTGATAAGACCGTTAACGTCGAGCTTTTTGACCAAACAGGACGCGTCATCCCGACGGGAAAGGAGCAGACAAAGCTTTCATGTAAGACTAATCCAACTGTCGTCCCAGTTCATCATGACATGACCGAGCCATTCTTTTACGTGCGCAAAGTCCGCGTGAGCTTCAAGTCTTATTTGGTCAGCATTGCAGCCGTCGCTCTACGCTCCAGGGCCAACTTTGACGTGGTTGAAATGTCCAAGTGTAAACCGGACGAGGTGTTTAGTCCTCGAACCCAGCACTGCCACAAGTACACGTGCGAGCGGCCATCCTGTCAGGTGCCCATGATTAAACATGGTGTGGTCAAATGCGAGGGGACGGAAGAGGGGCAGACTTGCACGGTGACTTGTAAACCGGGCTACCGACCATTGAAGTCCTTCAAGATCATTTGTTTGAATAAGGAATGGGAGGGGATCAATAAAGCCTGTGTCCCTGTCAGTTGTGGAGTCCCGAGAATTCCCAATGGAAAACCCGATTGTCCACAAGGTCTTACGTTGGGCAAAAAATGCTCTCTGAAGTGTGCATCGGGAGCCAAAATGAGCGGCGGCGAGGGCAGTGTTACGTGTGAAGAAGACGGCAAATGGTCTGCGCAGAGCGCCTTCTGTGTCATGACGTGTCCACGCCCCGAAATCCCAGAACACAGCGTACCTCTCTTCGAGAGCAACTGTGTCGACAGCAAGAGGACATTCCTACCAGGCATGTCCTGTAAATTCCGATGCAAGCCTGGCTTCAGAGTGAAGGATAGAGACGATCCTGGGCGAAGGATCCTAAAGAAGCGTTGTACTAAGAGTGGTCGTTGGACTCAACCTACATGCGAGCCAATCATGTGCCCTGAACTGGCCGCCAACCTGCTTATGTGGTACAACTGCACTGATGGTAACGCCATGGGAAGCGTTTGTACTAATGACTGCCCAGGAGAAGAGATTCACCAAGTCAAGTGTGAAGAGAATGGACAATGGAGTGAACCACTAAAACGTTGTACATCCGGCAGCTGTTTCAAACCCGAAGAGACAAATAATGTTTCTTTTTCCTGCGAGGATTACTTTCCTGGAGGAATATGCAGAGCTAAATGCACAGACTCTGAACAAGATGTTATTGAACTCGGCAACGAAGACAGGTGGCGCGTGACCATCACGTGCACCCGGAAACTTGACTGGCACCCAGATCCCAAAAATTTGCGGTGCGTTCCCGGTTGCAAGATCTCCTTTATCGCGGATGATTGGTGCGATCCGTCTAACAACAACCAGCACTGTCGGTGGGATGGAGGGGATTGCTGTGCCTCTACGACTAGAAACCGAATCGTTAAACCCATGCCAATGAACTGTACATCAGAGTGTGAATGTAAAGATCCTCAAGCAAAAGAAAATCAAGGTCCGGGAGGATCCAGCGGTATCGATGACGAAGATGATGATGACGAAGATAGGCTGGAAGGAAGCGGATCAGAAGAGAGGCAGCAGAAGACGTCTAAACGATAA

Transcript

PcrG026809.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR011936 all species →	Repeat	Myxococcus cysteine-rich repeat	Interproscan
IPR043543 all species →	Family	Pappalysin-1/2	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR006558 all species →	Domain	LamG-like jellyroll fold	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46130 all species →	LAMGL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG026809.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.