Gene detail

Detailed information of PcrG027167.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_82:923623...930483
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG027167.mRNA1

ACTTCTTGGCAAACATGGCGGCAAGAGGAAGCTCTGTGTTTGCAAGGATAATTCGTCGAGAGCTGCCTGCCACATTCCTGCACGAGGACGATGAGTGCATTGCCATTGAAGATATTAACCCACAAGCACCTACCCACTTCCTGGTGATTCCAAAAAGGGAAATTAGAAAGTTGTCAGACACTACTGATGAGGATGAGCAACTCCTTGGTCACTGTATGATTGTTGCAAAGAAAGTGGCAGCTCAGAAGGGTATTGACCAGAATGGTTATCGTGTGGTTATTAACACTGGACCTCATGGCTGCCAGTCTGTGTATCACATTCACTTGCATGTTATGGGAGGACGGCCACTAAAATGGCCTGCAGGATGACTAGGCCCTGCTCAGGATTAATTCAAGACTTCCAAGTATTAACCTATTAATTCTCATTAGATTCCCACTCCTTACTGCATTGGTATACTTTCAAACAAACAAGTCATGGAAAATCTTTTGAACGCGCGAGATATGCAAACATCGCCTGTCTTATTTGTTGATCTTTCGTGGCAATTTGCATCACTTGCAATGTTGTCTAATCCCGGTAACCATCTCCCTCTCCCCATACCCCGCCCCCCTCCAAAAAAAAGGGTGTAGAACAAAGGAAAAGagtttgtttcagtccttcagagaagcagcgcgaaaatcggcgtacggaaaataagagtagcagtgtagggaagaaggctaccttagcttagtcccgttgccatttctccacttgccattcttagccctaatcgtaaattttgcaccacactaactaactgaacgcctggagcaggATTAAAGGAAGGAAATTCGAAAACAGCATTTATAGTGAACAAACAAGAATGTCAGCTACCAATGCGTTACAGCAATGTAGTTTGCAGTAATCCACAGTTAATGTATTTTCAAAGGAAACGTTTAACTTTTTTAAATATTAATTGTAAGCAAAAACAAAACATTATACACTTCCATAACAAAGCTACATAATTTGTAGAATAGTATTGTCACTAAAACACAGCTTTCATTTACGCAGTGTGTAATCTCACTCAAAAATAGCCCTTACAATGGCAACAAATATGTTAGACGTGTAGTCCTTGTGCTTCTTTCGCAAAGGATTTGATTTTGTTGGTTGTCACAAAAATGTTGATAAGACAAATAAAATAAAGCTGTAAATATTACCTACGTGTCTAATTGAGACTATTTTGCCCTTGAAATTTTCAATGGTCAGCTTTGTGTGCTAAACTAGGGTATAGCTTGCCATAAAACGCTAAATTTGTTAGGTTTATAATCCAAAACTTTGCTGCAACCATCAGGGTTCCGAACATGATTGTCAGTCCAACcatagttaatatagggaactggttatgaaacccggtaaacatcaaagcagcaaacaaagaggccaagatggaggttggaaggtccatgaccgtgcacatcttttgtttttcactcatacaccatgcatgaattacgtaatcgcaatgtttctattggtcactatcgtgaacacacgtaacctcccattgtattttgccaggttttgtgcacggtcaacccccaaaatagcgaacaaaaacctacaacaaagaactttgccgggtttcataaccatctccctttattaactatgGTCCAACACTCCATGGTCCCAAAAGGGCCTGACTAAGGACTCCAGGGTACGGAAAAAGTAGGGCTCCAATATATGCGTCATCTAAGAGCCCCTCTCCCCCTGTAGGGCCCTGACAACTAAGAGATGGCATAACCCCCGGGCATAACCGTTCATTTCAACATTGCAATGCTCGGTATTCCTTTACACTGATAATACATGTACACTAAACAAAGCAGCTGGTAAAAGAAATAAAGAAAACTGTACAATTTACCAAAGGAATTTGTCTTGGGGTAAAACCGAATTCTGAAAGCTTGTGCTTTTAAGACATGTAAATAGGTCGAGTACTTTCTGCTGTGACGTGTCCAAGAGGCTGCCTCATACCCAGCCCTCTCGTTACTCAGCGCGCATACAGTACTCGCACACCTGCGTTTCCAATGAACGCTTAACCATTCAACCCTCCCCCCGATGACAGGCAACGGCACCTAGGGACGAAGTAGAATCTGTAGTTATTTCGAAAAAGTTTTTTGTTGACAACTGACGTTTCGACTACCTGATGAGGAAGGCATTTCGGTTACCGGTGCACCTtaaaggagctacgtcacgatattttgagccatttcttccacggcctaagccccggtttaagtgttgggaaacctaaaactaatggcttgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01230 all species →	HIT	HIT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR001310 all species →	Family	Histidine triad (HIT) protein	Interproscan
IPR011146 all species →	Domain	HIT-like domain	Interproscan
IPR019808 all species →	Conserved_site	Histidine triad, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23089 all species →	HISTIDINE TRIAD HIT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009154 all species →	Biological Process	purine ribonucleotide catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02503	HINT1_2, hinT, hit; histidine triad (HIT) family protein	EC:3.9.1.-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.