Gene detail

Detailed information of PcrG027225.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_83:1412954...1439676
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG027225.mRNA1

ATGTCTTATTTGTTCCCTATTTGCAAACATAAGCTTCGGGCCGTGAAGAGGCTGAAAACAGTGAAAATGTCGTCGAATGGAGTGGCCGTCGCAAAGGTCCTTGAACAGATTCAACTTGTGCAGGGAATGATCGACATCAATGCCTCCAGCTTAAACAGTCTACGAACACAGTTTTCTACCAACAGTGACTTGATCCAGCACGAAATCCGCACACTCGAGGGAAAACTTGTAAAACTGTTTTCAAGGCAGCTAGTTGTGAAACAGAAATGTAATAATGAAGATTGGAATCACAACGAGAAACTCCGTTATTATCCTAAACTTGAACAGTGGCTCCAAGTAGTTGGAATAAACGAGGAGGCAATCAAGAATTTGGAAGAGAAGTGTTGCACAATTGAAGGTCTTCTGTCCTTGTCAGATGACAAAGTTCGAGCTATGCTTGAGAACTATGCAGATGGACAAGAAGAGAGCCGGAGGCTGATTGCTGCTCTGAAACATCTGCAGGCCTATACGGAACGTCAGAAACAGGGCCATAAAGACAGCACATCAGATATTTACTGGGAATCTTGGGACACTGGCAAAACAAGAGAAAAGAGTGCCAGTCTTTCCATCAGTCCTTCAGAGCGCTCGTCACGTTCATCTGTCACCTTAGACAGTGATGTGCCATTGTCGTCACCAAGCTCAGATGCAGGCACAGAAGGCTCCAGGCTGTCAACTTTATCTGCAAGTGATACTGATGGAGGACTTAGTCCTAAACACAATCCTCAACCGGCTTATTTCATGAAGAGAAGTGTATCTGATGATGCAAATTTAGGAAACAGGATATTCGTTAACAGTGAAAATCCAAATTTAACTGTTGGCAAAAAGCGTGGAGGAAAGCTTGAACCAGTCACTCCACTCACAATACATATTCCAAAAAGTACCAGTGGTGACATCTCACTTTATTCCCAGTCAGATTCTGAATCAGATCACAATGCAAGCTCCCACACAATAAGTTCTCCGTCTAGGTATAATGTCGCTCACTATGGCATAGGACACACAATAAAACACAGGTTTTCTCAGAAGACATTCATTGGTAGCTTAGCATGCGATTATTGCCACAAAATCCTTTTGGTTGGTAAAAAATGCAAAGAGTGCAAgcaaaaatttcacaagaaatgtgctaaACTAGCTCCTCCTGTCTGTAAGTTGCCTAAAGAATGTGGAGAGTTTTTCACAGCTCAACTTCGGCGAGCTGTAAATTATCGCTCTTTACCAATGATACGCCCTCAAGTAAAGAGAACAAACTCAGAGCCATCCAGTATTGCTCTACAAGTGGAGAGATACATGCGTGAGCAAAATAGGACCAACCGTAGCCATGGTGATTTGAATACAGTGGACCACAAATCATGGTCTGCAGGGATCCCCAATGAAATTCCATCCCAGTTTGCAAAGGTAACTAGTGGAGCTAGTGGAACTAGTGGTGACTCTTGCtcaacatcatcatcaacgtcatcaccaccttcttcacctcttcaAACCAATACAGCTAGCCTGTCAGCACAAGAAGAGCTGGATCAGTTTCCAGATTCACATTTTTCATTTACAGATGTATCAAGAATGACATCTGTATCATCCATGCAGAGTGATGAAATGATTGACTCGACCAGTACCTTGGTGAGGACAGAAAGTGTCAAATCACGGCAGAGTAATAACACTACAACAAGTAATGACTCGACATTGTCAGGGGAAGATGTTCCCGGTGTTGACCAGATCGACAGTCAAATATCTGATGTAGATCCTGACAGTAAAACATGGGGAAGAAAGAAGGTTGGAAAAGCCCACATGCTATGGGACTTACATCAAAGAGGCAGCTTAATGTCTGAGTGGGTGATACCATTTGAAGAGCTTGAAATCACGTGGAGTCCACTGGGCTCTGGCAGATTTGGGAAAGTCTACAGGGGCCACTGGCACGGTGAAGTGGCAGTTAAAATGATTGAGATTGAAAATCCAACAGAACAACAGCTTAATGCCTTCAAGTTCCAAGTTGGAACGTTTCGAAAGACTCGCCATGAAAATGTAGTGCTATTCATGGGCGCCTGCATGGATCCGCCAAAACTCGCTATTATAACAAGCATGTGTCGTGGCTTTTCTCTTTACACTCATATACATGTTAGAAAGGACAACTTTCAAGACCAGCCGTTCAAAATCGCACATATTTGTACTCAGATTTCTCAGGGGATGGGATATCTTCACGCTCGAGGAATCGTACACACTGATCTGCGTTCCAAGAATGTATTTCTGGAGTTAAATAACCGTGTTGTGATCACTGATTTCGGCTTGTTCAGTGTAGCTGGCTTGACCACCAAGTCGGTCAGACAAGGCATGCTGATGATCCCAGAAGGATGGCTGCCGTATTTAGCTCCTGAAATTCTGCGCTCGCTCACAACCCAGCAAGATGCCCCTGACTCGTCGCAGTTCACCTTTGCCACGGATATGTACGCTTTTGGGACTGTCTGGTACGAAATGTGTTCTGGGTCATGGCCTTTCAAAAAACAAATTCCTGAAGCCATTATCTGGCAAGTGGGCAAAGGAGTTAAACAGTCACTAGCAAATGTAATTGTTCCACGGGAAGTAAAGGATACTTTAACGGTTTGCTGGGCGTTTGAACCGGAAAAGCGGCCAACTTTCAGCAATTTACTTAGAACGTTAGAAAGACTTCCTAAACAGAGACAACGACTACACAGAAGTCCGTCCCAACCATGCACTGTGGGGAGAGGGGCTGATGGGCTTACCGTATAA

Transcript

PcrG027225.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13543 all species →	SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	Domain	Interproscan
PF20406 all species →	SAM_KSR1_N	Kinase suppressor RAS 1 N-terminal helical hairpin	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR025561 all species →	Domain	Kinase suppressor of RAS, SAM-like domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR046861 all species →	Domain	Kinase suppressor RAS 1, N-terminal helical hairpin	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR046933 all species →	Homologous_superfamily	Kinase suppressor RAS 1, N-terminal helical hairpin superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PcrG027225.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.