Gene detail

Detailed information of PcrG027652.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_87:1043574...1058691
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG027652.mRNA1

CAAACATTTAATATTCATGTTTATGCCGTATTTGCTTTACCATTCAGCAAATATTCGATGAGATGGCTAGCGCTCTTATGAGCTTGAATCGCTAAACCAAAATCAGTAACAGTGAATAATTCAGCGTCGCAGCAAATCATGCATACAATGCAGCGATTGAAATTTCTGCTAGTTTTACTCATCGCGTTTATATTTATAGTCATAGCAGCCACTTTTTCTTATTTTGGTTCAAGCCGTTTGAATATCACGTCTTCACTAATCAAGGGAGTTCAGACAGATGTTGAGGAAAGGCATTATTATAATATTCACAGTTGGCAAGATAATGCGCCGGTAACATCAGCAACAAAGGCGAAAAGAATAATTTATAACCGAGTAGGGAAATGTGGTAGTCGCACTATGATACAACTTATGTCATCGCTTGCAAGGAAAAATGGCTTCACAGTTATTGGTTCGACAAGATACAGACTTTTACATCTTGACCTTCGGGATCAGGTAGAATATGTGAACTTTCTAGACAGCCTTCAAGCGCCGTTCATATATCACCATCACGTTCACTTTGTGGACTTTAAAAGATTTGGTGCCGTTCAGCCTATTCACATTAACCTCATTCGTGATCCACTCGGCCGCCTTGTTTCTTCATACTACTATAAACGATTTGGGGACGCTAGGGAGGGACACAGAACATGGAGCTTTCAAGGCACAGAGCAGGAGAAAAACCAGtcatttGACGAGTGTGTCCTTAATAAAGTGCCAGAATGCGTTGATCCTGCAAAACTTTTCTACATTGTTCCGTACTTTTGTGGCCAAGAATCCTTTTGCAGGAAACCTTCAGAGCTGGCTCTAAGACAAGCCAAGATAAACGTAATCACAAACTACCTGGTGGTAGGAGTGACCGAGGAGATTGAAGATTTTCTATCTGTTCTTGAGAAACTTTTACCTGAATTTTTCAAAGGCGTACAGGATATTTACAAGAAACCAGACGACGCGCTCCAGAACAAAATGACGAGAACCAAGACAGCAAATAAGAAGGGACCTTCCGCGGAAGTAGAAAAGATTGTGAAAAAACATCTTGAATTAGAGTACGATTTTTACAACTTTGTAAAGGACAGATTTCATCGACTAAAAAGCGAATTAAGGTTACGAGATGCAGCTTAAAAAATTAGTGGTACCACTGTAAAAATGCGTATTTATATTGAAAAGTAAGATGTTTAATAAAGCATTTTATATTATTCACATAGACCCTTattctcgtccccagagccgctcatccctcttggctggctgggcctggtacacgaggaacaagtatctctgaggagacatgatttgattggatagaatctaacaaagggaatccaatcagatcagccgtgttatgcaccaggcccagctgactaagaggaacaagggctctggggacgagaatgATGGACTCTAGCCCAGTCTCTCGACCTCTTCGCTTAGACAAGCCGGTAGAAAGGGGACTGGAGCTGCTACGTACGTAGATGACGGAAAGAATGAATGAAGAAAACAAAAATAAATAAATTTAGCACCCCAAATTATCTATTTATCACAAGCCAACCCTGAAACAATTTGTTCACTAGAAACGTGATAGGCTAATTTTAATACTTCACTACTGATTTATCATATGCTATATTTGGAAGGAGAGTAAATACTTGTAACTTATTTTTAAAATAGAAGGTATAATGATATGCAATTATAATAAAGAAAGCTTTGAATGAAGGGAACCACGACACAGAATCAACTCAGTACTTCTTTTTGTATTGATGCTTGTACAAACGtagagtgaaacctagatttagcaaacctgaaaataacgacgtcctcggtataacgaacgatattcttcgccctagttatagcaaaatatatggaaaaggacctcgatataacgaaatctcgttatggcgaacacatctgtcagtcacgtggcccttccttatatcgaggttccaatgtaCCAGGCGTCCCTATAAGGACTTAACGTgtagacgaagtgaagccggatctttgtgaagatctggatcagccgtgttcaataaagcataaacctaaatgaaaggctgatcggaccgcTATGGGGCAAATTTTTAAATATTGGGCATTAAAAATTTACCTTTTGgctgtccgatcagccttccatttggatttatcttttgcagctaggacatcacgagacctgtttttcatacaattatgggctata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007734 all species →	Family	Heparan sulphate 2-O-sulfotransferase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12129 all species →	HEPARAN SULFATE 2-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03193	UST; dermatan/chondrotin sulfate uronyl 2-O-sulfotransferase UST	EC:2.8.2.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.