Gene detail

Detailed information of PcrG027997.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_90:5146746...5161762
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

PcrG027997.mRNA1

ACCTATCGATTAAGATGGCGGCCAAGTGTACATATCTTTCGTCCTTTCCTGTTATTCCACTGGCAAATATTTTCTCGTTCTTGGACCGAGAAGACCTGGCAAGGTGCTGTCAAGTTTGCAGTCGATTTAATCAAGTTATCTATAGCCTTCCTGCTTGGAAAACATGGTGTAAAGAAGTATGGTTGGTGGAAGAATGTCCGCCGGAGAAGAACTGGAAACAATTGTACTACGAATGGAGAGGTAACTGGGTGCGATACGAATCGTGCTATGCTCCCATTAAACGAGCTTGGAACATCATTGAAGAATTCACCAAACTTCACTGCCGCTGCATTTATGACTCTTTGAACGGAGGGTTAACAGAGGAGGAGATCAACAGAACGGAATTAAGGGAACTTAAAGGTTGTCTGCTTCCAAATGACCTCAGATGCTCCCTTCGTATCCACAATGGACAACGACTTGTTAGCGCAGGACTGATTGGTTCCATGGCAATATCCAACCACTATCAAAGTGAATCTCTCTTGCAACTTGACGTCGCCACTAGCGGTCTTCGGCCGAAGGATGGTCTGCGTAACTGTATTCCCATTTCGTTTTGTGTCAATACTGGAAGTGGACAATTTATGGCATTGACAAATGAAGAAGGCCACAATCCAGGGGAAATCTTTTGGCCAAGTCCTGATCGCAGTATGGACAATTTTGATGTCTCTCCAATGAGAATGCACCATTTTCTAAGTGGGAACAATTTTGCTACATGGCTGAGTAAATATGCCGATCAATTACTAAGCAACTGCTACCCTATTATTAACAGTGAAATTTACAAGTTCCTGTTTTCTGGCACCATGACAACCAATGGTATTAGGGTTACCACGACAACTGCATTTCTACCAGTGCTAAGCAGTGTGAAGCCACCACTCTTTTTCTTCACATATCGCATATCAATTTCGATGGATCCTGAGGGCTCTTTGATGAACAAATGTCAGCTGACAACGCGACATTGGTACATTGAGGATGAAAATGGAGCCAAGGAGGAAGTACACGGTGATGGTGTAGTTGGCGAGTTTCCAGTGATGACACCAGGGGCCCGCCATGAATATATCAGTTGCACAACATTTTCAACTCCTACCGGAGTCATGAAAGGGAATTATGAATTTCGTTATCTCAATAAGCCAGGCAGCTTTAATGTGACAATTCCACCCATGAATTTTAAGAGCCTTTCTTTTGTAACTGCCGAGAATAGGTTGTCTAACTTGTCAGAGGGGAAGCACGAGGAAGAAAGAACCAGTTCAGGGTCCGATGAAAGAGAAAGTGATCCTGTAGATATGAATGTATAAAATGCAACTTGTAACATAGTTTTCAAAAAAGAATAGTATAGAACTGACTTGCATATGATTCAAATATAGTTTATTCAGGACCAGAACAAGAGTTAAGCAAGTACAGTAAACAATTCACCTTCCACTCTTTTTTTAACTTGCAATATTTATGCGCTTGTCAAATTCTAATCTGCCCAAAATAAGAGTAGAATATCAGTTGCAAGATTGTAATTTATTTTTCATGCCATAATGCATGTTTTTCTGTGGAAGCAACAAACATGCAAATAATGGGCATGCCCTATGCATATCTGTTTAGTTTTGAGCACAGTTTGAAGAATCTAAGAGAAAAAGGTAGAGAGAGATAAAGATGCAACCTAGTGTTACTACTACTACTCTTTTTTTAGCAAACaaacttgtaacatgagccatgtgcattagaactttataaagaacaggtgtgatttagggtgcatgcttcattggccaagatatgtaaatataatgaacttgaactgaccaatcatggtgcatgcaattttttgaacattttTCttagagcagatttcaattgagtgtcgtaaaaccaaaaccaagtttttacactggccaatcacaaagcctgcagagcaatctattgtccaatcaaaactcaaagcaattacacaaagcgcgggaaatcttgcacgagcaagtcatgatttgttttggttttacttttgattggtcgagaaagtggcgtgagttttttaagccaatcgctgagcgtagtaatgcaaaaccagagtaaatgtaaattactttcgacagtcaagtgaaaatcactctaAGTTCTTTGAGACCCCAAAGTTATCCTTCTCTGAAGGACACCAAAAGAATAGGTGAATTTTTTCACATCCTTGCTACTAGGGAAGTCCAGTTACACTGTAAGTTGCATTTCTTCACTTGACAGCTCTGCTCAAGTAGAGTTGACAAATTGAGTATGACTCAGCAACCCATTGTAAGGCCCTCACTTACTTCATGTGCAACCACCTCCCCAAAGTGACCACTGTTCCAAAAAATAATAAAATTAATAAATAATAAATTAAAAAATCCTTCTACGAGATATGCCTGCAGGGAACCATGGAATATAATCAGCATTGGCAAGCCTATGAACggggaatcacagttctaataaatgctgtttgagcagtatcgtgtggtacataaaagtcctttgaaaagtctagaatattatcctgaatgtttgggagacattttcccaaaaatcacaaacttcctgaaaatttcacttcattacttcatttcccagaaaaagttcctagtctcttgattcctggcaaaatcctcagattcccggattttgtttttctcctgaaacagaccttcttagagttgacacccccCCCCCCCCCTCGTCAATGACATGTTCTCTTGAACAATTACGATTCCCTGCAGGCACATCCTTTAAACTGTTTAAATTTACATTAGAATCTTTTGTAAACGACCACCCTGTTGCAGGCAACGTCAGCCACTTACAATGTAGGGGCAACGGATTACAAATTTGAAACGTTTTTAACCTTTGGTAGGGACAACTTGACTTGACCTCACTATGGATAATAAAGGATTGTTCTTGCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04379 all species →	DUF525	ApaG domain	Family	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF09346 all species →	SMI1_KNR4	SMI1 / KNR4 family (SUKH-1)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036767 all species →	Homologous_superfamily	ApaG domain superfamily	Interproscan
IPR037883 all species →	Homologous_superfamily	Knr4/Smi1-like domain superfamily	Interproscan
IPR007474 all species →	Domain	ApaG domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR018958 all species →	Domain	Knr4/Smi1-like domain	Interproscan
IPR052121 all species →	Family	F-box Protein Family Substrate Recognition Components	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46550 all species →	F-BOX ONLY PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10290	FBXO3; F-box protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.