Gene detail

Detailed information of PcrG028671.mRNA1 in Podabacia crustacea

Genomic Location: scaffold_96:3854067...3862144
NR annotation: no NCBI-NR hit recorded
Species Podabacia crustacea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PcrG028671.mRNA1

ATGATGCTGGGTCTGAAAGATATGAGTGAGGAAGAGTATGGGTACTCTCCACTCCACAATGCTGTCATTAGAAAGGACTTGAACGCTGTCCACCTGCTTACAACAGCAGGAAAATGTGACCTGGAATCCAGAGATTCAATGGGTTTTACAGCACTCCATTTGGCTACATTGCGGGGGGACAGAAATCTTGTAGAAAAGTTGGTTCAAATGGGATGCGACATTAATAGCCGTACAAAAGAAGGGATGACGTCACTTCACATTGGTAGCGAGCGTGCTGGATTTGAGGATATCCTAACTTTGTTAGCATTATCTTCATGCGATGTTAACGCTCGCAACAAACTTGGCCGCACCGCACTGCACCTTGCCGCCAAACAAGGAAACCTTGAAAATCTAAGGATACTTCTTGACGCTGGCTGCGACAGAAACGTCAAAGACAAACTTGGCTTCACCGCAGTGGGCTTGGCTTTTAAGTTTAATCAGAAAGCAAGCGCAGATATTTTACTCCACTACAAGCCTCGACGAAATCAAACCGTTTGCGAAGAAACTGCTCATTGTGAGACCCTTTCAAAGGAAGCAACGTGTCAAAATATTCAAGTAAAATGCGAGGGAATAACACCACTTATTAAGTCCAAAGGCCTTTGTGATAAAACGCTCTTGAAACTTACAGACTGTGTGTCCAACAGAAAAGCTCTTTCTTTAAAAATTTACAATCTTATCTTAACTATTCTGACGCAGAAGAGAAACACATTAGATGGATTGGCGGCTTTTAAATCGAGGAAAACAATTAAAGCTGTTGAAACTGTCTTCGAAAGAAAGCTCTTAAATCTGATTTTAACTTCGACTTCGTTTATTCAGTACCCATTGACGCCATACCTAATTACAACGCTAGACGATAAATGTCTTTGTGGCCTTAAACCTCGGGCAATGGAGAGAAGCAAGTCGCTTTCGAGCAGTTTGGAGTCAGGCGTGTTGAAGAATTTGCTGCAAGGCCTTAGAGATACTTTACGTTCCTCTCCAAAGCCACCGAAACCCGCTTGTAAGAGCGACATGAGTGTAATTTCGACTTTCAACTGGAAACTAGAGGAGAATGAAACCAAAACCTTTCTGCAAGGCTTAAAGACTTTTGCTCAATTACTGGTAAAAGTTTGCAGCGACCAGAGAGCGCCAAATTCAACATCGCTAAACTTGTGTGACAGCAAAACTCTGGCGACTCCATGGCACATCACAGCCCTACAGAATGAGTGCGAACAGAAACTCACAGACATTGGAACGGAAGCGGTTGAAGGAGGCCTTATAAAGCTCAACAAAGTCTTAACCGCACTCGTAGATTCAGAAAAACCGAAGGATGATATTTATGGCATTAAAAAGAGTTGTGTGGCTGACAATTTCGAAAACTGTCTTTCATGTTTGGATCACGTGTTGAACATCAAAAGTACTTCAGCGCCATTTGCCCAAGATGTTTTAGAAACTTTTATCCAGTATCCAAACATTTTTATCTTTTGTCTTAAACAAAAATGTTCCTTGTTTAGCACGCTTGTGACCAAATTATTGCGAGACGAAGGCCCCTGGATGGCAGATAAAACTGCTAAAATTTTTCTTCAGGTCTGCGTTGCTTTGATGAGTGACCAGCGTTTGTTGCTCATTTGCGCAGGTATTGTTATGAAGCTCGGCCTCTCGCACCGCCACTCCAACGCTGTAGCTCTTGGAACTCGCATTTTAGTGAGAATGGGTCTTCTTAAACAAGAAGATGAAGTGGACATTGTTAAGGACCTTAAAGGTCCCCTCTTCGCTCTGGAACACCTATTCACCAAAGAATATTTTCCACGAGATCTTGCGGCCATCTTTGCCTCTTTCCTTTGTAAGTCAAGCCCCAGGCTGTTCGGATTGGATCAGCTGCGCCTTCGAGCACTAGCGTCTGCAGTTACCAAAGAGATTCTTCCGGCATCAGCTCATGAAGCCGAAAGTGACGCAGGAAAGGGCTTCAAACGGATCTGTGACATCGTCGCGGTCGAGGGAGACTGTGAACTACTTGTAAAGTGTGTGGATCCCCTGTTTTCGCGCGCATTTGTGACGTTGAAATGCGACATGTGGCCCATTGGCGAAAGCATTCTTGTTTATCTCGGTTTACTGAAAAGTGAATTTCTTATTGAAACTGTTAGGAACCTCGGTTGCGCTTTAAAAGTATTGCAATATGCGGTGAAGCAAAGCTTTTTTCCACCTCTTCTGAAACAAATGTTTGTGTATTTTCTACAAAAACCAAATCCAGCTCTTACGCCATATTCTACAGAAGTCGACGAGATCCTGAATTCATTGACCACTGCAACGTAG

Transcript

PcrG028671.mRNA1

TCTTGAGCTGGATGATGCTGGGTCTGAAAGATATGAGTGAGGAAGAGTATGGGTACTCTCCACTCCACAATGCTGTCATTAGAAAGGACTTGAACGCTGTCCACCTGCTTACAACAGCAGGAAAATGTGACCTGGAATCCAGAGATTCAATGGGTTTTACAGCACTCCATTTGGCTACATTGCGGGGGGACAGAAATCTTGTAGAAAAGTTGGTTCAAATGGGATGCGACATTAATAGCCGTACAAAAGAAGGGATGACGTCACTTCACATTGGTAGCGAGCGTGCTGGATTTGAGGATATCCTAACTTTGTTAGCATTATCTTCATGCGATGTTAACGCTCGCAACAAACTTGGCCGCACCGCACTGCACCTTGCCGCCAAACAAGGAAACCTTGAAAATCTAAGGATACTTCTTGACGCTGGCTGCGACAGAAACGTCAAAGACAAACTTGGCTTCACCGCAGTGGGCTTGGCTTTTAAGTTTAATCAGAAAGCAAGCGCAGATATTTTACTCCACTACAAGCCTCGACGAAATCAAACCGTTTGCGAAGAAACTGCTCATTGTGAGACCCTTTCAAAGGAAGCAACGTGTCAAAATATTCAAGTAAAATGCGAGGGAATAACACCACTTATTAAGTCCAAAGGCCTTTGTGATAAAACGCTCTTGAAACTTACAGACTGTGTGTCCAACAGAAAAGCTCTTTCTTTAAAAATTTACAATCTTATCTTAACTATTCTGACGCAGAAGAGAAACACATTAGATGGATTGGCGGCTTTTAAATCGAGGAAAACAATTAAAGCTGTTGAAACTGTCTTCGAAAGAAAGCTCTTAAATCTGATTTTAACTTCGACTTCGTTTATTCAGTACCCATTGACGCCATACCTAATTACAACGCTAGACGATAAATGTCTTTGTGGCCTTAAACCTCGGGCAATGGAGAGAAGCAAGTCGCTTTCGAGCAGTTTGGAGTCAGGCGTGTTGAAGAATTTGCTGCAAGGCCTTAGAGATACTTTACGTTCCTCTCCAAAGCCACCGAAACCCGCTTGTAAGAGCGACATGAGTGTAATTTCGACTTTCAACTGGAAACTAGAGGAGAATGAAACCAAAACCTTTCTGCAAGGCTTAAAGACTTTTGCTCAATTACTGGTAAAAGTTTGCAGCGACCAGAGAGCGCCAAATTCAACATCGCTAAACTTGTGTGACAGCAAAACTCTGGCGACTCCATGGCACATCACAGCCCTACAGAATGAGTGCGAACAGAAACTCACAGACATTGGAACGGAAGCGGTTGAAGGAGGCCTTATAAAGCTCAACAAAGTCTTAACCGCACTCGTAGATTCAGAAAAACCGAAGGATGATATTTATGGCATTAAAAAGAGTTGTGTGGCTGACAATTTCGAAAACTGTCTTTCATGTTTGGATCACGTGTTGAACATCAAAAGTACTTCAGCGCCATTTGCCCAAGATGTTTTAGAAACTTTTATCCAGTATCCAAACATTTTTATCTTTTGTCTTAAACAAAAATGTTCCTTGTTTAGCACGCTTGTGACCAAATTATTGCGAGACGAAGGCCCCTGGATGGCAGATAAAACTGCTAAAATTTTTCTTCAGGTCTGCGTTGCTTTGATGAGTGACCAGCGTTTGTTGCTCATTTGCGCAGGTATTGTTATGAAGCTCGGCCTCTCGCACCGCCACTCCAACGCTGTAGCTCTTGGAACTCGCATTTTAGTGAGAATGGGTCTTCTTAAACAAGAAGATGAAGTGGACATTGTTAAGGACCTTAAAGGTCCCCTCTTCGCTCTGGAACACCTATTCACCAAAGAATATTTTCCACGAGATCTTGCGGCCATCTTTGCCTCTTTCCTTTGTAAGTCAAGCCCCAGGCTGTTCGGATTGGATCAGCTGCGCCTTCGAGCACTAGCGTCTGCAGTTACCAAAGAGATTCTTCCGGCATCAGCTCATGAAGCCGAAAGTGACGCAGGAAAGGGCTTCAAACGGATCTGTGACATCGTCGCGGTCGAGGGAGACTGTGAACTACTTGTAAAGTGTGTGGATCCCCTGTTTTCGCGCGCATTTGTGACGTTGAAATGCGACATGTGGCCCATTGGCGAAAGCATTCTTGTTTATCTCGGTTTACTGAAAAGTGAATTTCTTATTGAAACTGTTAGGAACCTCGGTTGCGCTTTAAAAGTATTGCAATATGCGGTGAAGCAAAGCTTTTTTCCACCTCTTCTGAAACAAATGTTTGTGTATTTTCTACAAAAACCAAATCCAGCTCTTACGCCATATTCTACAGAAGTCGACGAGATCCTGAATTCATTGACCACTGCAACGTAGCTCAGCAAATCAACGAAAAACGTAATCGTTGTTACACTGTGAGCAAtaggggtggtgaatggttgcgaaaaaaaggtctcccaaaatattttagtcaattcaaacgccctcgcagtcccattcacgttttagagcacttccgaactccctacagtctcaatttttttttttggcaaagcaattttggtgcctcgatcgaggtcttgcaatgcaaaatcttaaaaactgtcgatcttgcagagaaaagtactagtctagcacgatgccatctagcaaagtcttattttttccatccaccaccccGAGAAATTCCAGCTGCTTCGAATTCTTGTCACAGATCCAGAGACAGCTTGCATGTACGTTGTCCAAAGTAATATTTATTCTGTGTATGTTTGTTTAGTCAGGTCCTTTAACAATTGATATGGACATTGGAAATGTGCTTCAATCGTGAAAATTTCCCCAGCCCTCTTTGGGACTATATGTAACTCATTCGAGTGAATATATTTTTAAATGTAAAACTGTTAATATATAGAGAAATATGTTTTCCATATCTTAACGTATAAAACGAGGAAACTACGATATACTGTACACAAGAAATAAATCGCCTGATTTT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009416 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22499	ARMC5; armadillo repeat-containing protein 5	-	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.