Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.1805_t in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000001:6113297...6124772
NR annotation: XP_027039080.1, uncharacterized protein LOC113667460 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.1805_t

ATGTGTGGCGATGTCAATTCAACTTCATCTACGATGCCCGTAACTGAAGTACAGTGGATCGGGGCCAGTTGTGGACGGCACAGCACTTACACCTTCTACAGAGGTTTCAGATTAATTGTCGATGGCGTGGCAAAAAATTTCTGTCTCGGAGAGTTTTATTTTGTGAGGAATTCCACAGACCAACCGATATGCATAGCTGAACTACAATTAGTTTGGTACGACGCGAGTACTGACAGCCAGCTTGCTTCCGCGAGGCTTTATTTTAGACCCGAAGATACTCCCGCAGGACGCCTTGCAAACCACGGACAGGATGAGTTACTATATGCTGACCAGAAGGTTGTCATTAAATGCCACGACATGGCTGTATGGCAGAATTCAGGACTCCAATGGAATTGTGGCATGTTACCCTTGTGTGAAAGTGATTTTGTATGTGTCAATGACAAATACTATTTGAACAGCAACAATGTTGCTAAGGAGAAAGAAACTTTAAAAACTGCCAGGGAGGCATGGATGAAAAGGGATCATCCTCGCAGCCTCCACATACTTACATTTCCGGCTTATTGTCGCTACAGAGCTCTTAAAAGGAGGCTCTTATCAGGCATGTTTTTGACAAGAGCCCAGTTGACTGCACTGGGTGGAGTTATTGCGGAACACAAAAGTATACGGGTGCTCTTCTGTAGAGATAGTTTTCATCATCCCAGCTTGGACAAGTTTGAATTATCTGGTGATAACAAAGCACCAGTTCTGAAAGGTAGGCCAAGGAAGAAAAAGAAGCTTACTGCGCAAAACAATGTGCTCAAGAAGAAACGGTTTGTGGCAGACATTCAAAATCACCTTGGAAATTCACCAGCAGCAAAACGATGCAAAGTATCAGAGGAAGAAGAGAGTGCAGGTTCTGATATGTCAGAAGGTGTGCAAGACAAGATAAAGGCACCTCCTGCAATGGGAAGGAAAACTAAGACCAACGGGCCACCGCCCTTAATAAAGCCACGAATACAAGTCAATAACGCAGAAAAGGCAGAAACAGCAGAGATTCCCAAAATTGCTGTTCAAGATGTGCCATTGGCAAAAGGAGAACATACAAAGATCCCACCTCCTCTTATTCCCTCTCGCAAGATAAAGGCAGATGTGCTGTGTCTCTCACAACCACTGCAGTCTAGTCAAAAGGAAATCAGTACAAATATTTCCGAGTGTTCAAGGACCACACCTATTCAAAAGCAAGTTTTCTTTTCGAACGCAAAGCTAAGGGATGTTGAAAACAGTATGACCAATAAAAAGACTGTTTCACTGATGAAACCACACTTGACTGATAGAGTTAGAACAAATGTTACAGTTATACCTGCTTCAAGTTCTAGCTCTATGTCAGAGAGTAGAACAAGCAGAGTACCAAATTCCCTCACAGAAAACAAGAAAACTTCAAATGGGACAGCTGTCACACACACCCATAATGTTGACAATTCGAGAATACAGCCAGCCGTCCAGGCCAATGTACATCCACCTACTGTCTTGAGCACCCGACCAGTAACTACAACACAAGGCACCGTCAGCACACAGCTAGCAGCATCTACCTGCAATGTTATGCGCAACCAACCTGTGGCATGTTTGCAGCAGCCCATAAGCAGTGTGCAGTCAGTTCCAGCAAAATCTTTTCAAAATGCCACACCAATTTCAGGACCCATTTCATCTTCAGTGAACATCAATGATGTTACAAAGCCAAGGTTCAGTAAGGAAAATGAAGAAAAGCATTTCAGACCACCCTCTGTTTCAGAGGAGAAGAAAGAGAATGAGATGAAACAAATGGAGGAATCTATTTTGTGGAAAAAGAAGAAGAAAAGACTGAGGATGCCTGGAAATGTCAAGGATGAGGTGTATGATGACGATGATGAGAAGTTCTTCATGCAAACCTTACGTGACTTCATGAGAAAGAATAACCAGCCACTTGGCAAGTTGCCTGCCTTGGGCTTTAAGAAAGTTAATCTGTGGACAATGTACAACACAGTGCAGAAATTTGGAGGCTATGATGCAGTGACTGGGAAACGTCTGTGGCGACGTGTTTATGACTCACTTGGTGCAAGTACAACTATAACAAGTGCTGCCACTTATACCAAGAGACATTATGAAAGGTTACTCTTGCCATATGAGAAGCATATAAGAAACGATCTCAAGAGACAGATGGATGAGAAAAATCCCCCTTTTGCTGACAGCTGTGGACAAAAAGAGCTTTTAGACAAAACCAAGAAAAAACCAGGTTTAACAGTCTCCAATAGCAAAGCAGTGCAACCAAGCTTTCATGCAGACCAGGCTGTCGTAGAGAAGAAGCAGAATCAGGTCATGGAAAGAGATAGAAATACACATGATAATATTGCACCAGTGTCATCACAGCAAGCAATACCTTTAAGAGTGACCTCCACACCTGATGTAAAGAGGAATGTAATGCACATAGCCCATTCTCAAGAAATGAAACCTGTTATAACAACATCAGCCATCACCACAGCCTCCTATATGGAAGAAATTTCACCTGTTTCTGTGAAATCCATCACAGAAGAGTCTAAACTGTGGAGGAGCAAGTCAGTTGCAAGCACAGAGCCACTGATCACCTCATCCTCTGACAGAAGAGAAAAAGTTGTTCCAGTGCAACAATTTTCACAAGAGGCAACTGTCACTCAAGACAGGAAACAGCATCGCAGGGAAGAGATTCGTAGCCATGAGGAAACAAGTGCAAGAACCAACTTTGTCTATGCAAAAAACACAGTTGCTGTTGGTACCAATCTGAATCAAGCTATTCCACCACAGAGGGTCTCTAAAGTTGTGAATGATGATATGCGAGTGGTACCACCTTTACAGCAGTTAAATACTGCTAACAAAGGAAGAGAGATTATTGATTTAACATCAGAGGACAGTCCTCCGGGGGTACAGTCTAGGAGTCACACTGTGCCACAGACTCAGAAAGAAATGCAAGAAATATCCAAGGTGCAGAGACCAGTAATTGGTGGTGGAGAAAATTCCAGGCTGAAACATTTGCAGCAATTGCAAATAAAACAAGAACACAATGACAGTTCAAAGCACCACTCCACTAAAGAACTAAAACCCAAATTAGAAGGATCCATAGTTTATGGTGTGCAGCCGTACAGTGGTCAACCATTTAATGGCAACAAGGTTCCATCTCGTGTTCATGAAAGCTCTCCTGGGTTTACAACAAAGAAAGCTTTAGATGAAGTCTGTCCACCTCTAAAACAAGAAACATCCCATTCCAAACAGGAGAAGAAGAGGCATAAACAGGCACAATTGGAAAACTTAGAAGGCTGCTACACACACTCCCCTTCATCAGAGAGTGTTGATGAGCATTTTGCAGAATGGCTACGAAGACAGTCCACTGGGCAACAGCAACATCCTAAATCTAGCACCAGACATCACTACACTCCAGAACTTGGCCAGTTAAGGTATAACTATGTTTCCGAGGACCTCTGTCCCCCAGACTGCTCTTGCTCATTATCAGCAAGCAGGAAAGATGAAATTAGAGCCCCTCCACCGAAGCCAAAGAAGGAGCATTACGAAGAAGAGCTACCATTTCATGGTATGACATTTTACCCAGGAAGATGGAGTCCTTCCTCCATGATGCCAGATCGCCCTGATCTTTACATATCCTCTCCTTCTGCTCATTTGCAAGGACCACCAGACGCACTTTCGAGTCACTTGTGTACAGCATCCAGGATTTTCATTCCCACACCCCCTATGTTTAGTCCTACCTACCACTTGGGTGTGGCACCTGTGGGTGCTCCAGCCTTGATAACGGGCACAGATGATCAGCTACACATTCACCCACATTGTTTGCTGGGATCAACTTATCCTGGTACATCGAACTCAAGGACACCAGAAGGAACCAATTACCCATTATACTCTTTTACTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.1805_t

Protein

Uniprot

Uniprot term	Description
E1BLP6	AT-rich interactive domain-containing protein 5B OS=Bos taurus OX=9913 GN=ARID5B PE=3 SV=1
Q5ZJ69	AT-rich interactive domain-containing protein 5B OS=Gallus gallus OX=9031 GN=ARID5B PE=2 SV=1
Q8BM75	AT-rich interactive domain-containing protein 5B OS=Mus musculus OX=10090 GN=Arid5b PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051232	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan
IPR036431	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606	Domain	ARID DNA-binding domain	Interproscan
IPR043151	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964	RBP-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25857	ARID5; AT-rich interactive domain-containing protein 5	-	Transcription factors	ko03000	deepkoala