Detailed information of Pocillopora_acuta_HIv2___RNAseq.g10857.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000001:8113504...8136010
NR annotation: CAH3122261.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9R1C7Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1
O75400Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2
Q80W14Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00397WWWW domainDomainInterproscan
PF01846FFFF domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002713DomainFF domainInterproscan
IPR039726FamilyPre-mRNA-processing factor Prp40Interproscan
IPR001202DomainWW domainInterproscan
IPR036020Homologous_superfamilyWW domain superfamilyInterproscan
IPR036517Homologous_superfamilyFF domain superfamilyInterproscan
IPR001751Conserved_siteS100/Calcium binding protein 7/8-like, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12821PRPF40, PRP40; pre-mRNA-processing factor 40-Spliceosomeko03041deepkoala

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