Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g11252.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000001:12468894...12476003
NR annotation: CAH3144788.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q99816	Tumor susceptibility gene 101 protein OS=Homo sapiens OX=9606 GN=TSG101 PE=1 SV=2
Q6IRE4	Tumor susceptibility gene 101 protein OS=Rattus norvegicus OX=10116 GN=Tsg101 PE=1 SV=1
Q61187	Tumor susceptibility gene 101 protein OS=Mus musculus OX=10090 GN=Tsg101 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|UBC-like\|UEV
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05743	UEV	UEV domain	Domain	Interproscan
PF09454	Vps23_core	Vps23 core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008883	Domain	Ubiquitin E2 variant, N-terminal	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR037202	Homologous_superfamily	ESCRT assembly domain	Interproscan
IPR052070	Family	ESCRT-I complex UEV domain-containing protein	Interproscan
IPR017916	Domain	Steadiness box (SB) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23306	TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015031	Biological Process	protein transport	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0000813	Cellular Component	ESCRT I complex	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12183	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101	-	Exosome	ko04147	deepkoala