Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g11501.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000013:905832...913083
NR annotation: XP_027047780.1, polycomb protein eed-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q28DT7	Polycomb protein eed OS=Xenopus tropicalis OX=8364 GN=eed PE=2 SV=1
Q6AZS2	Polycomb protein eed-B OS=Xenopus laevis OX=8355 GN=eed-b PE=1 SV=2
Q8UUP2	Polycomb protein eed-A OS=Xenopus laevis OX=8355 GN=eed-a PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051243	Family	Polycomb group WD repeat-containing protein	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10253	POLYCOMB PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0006342	Biological Process	heterochromatin formation	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035098	Cellular Component	ESC/E(Z) complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11462	EED; polycomb protein EED	-	Chromosome and associated proteins	ko03036	deepkoala