Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g11720.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000013:3268888...3274495
NR annotation: XP_027040364.1, calponin-1-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9UPQ0	LIM and calponin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=LIMCH1 PE=1 SV=4
Q3KQW7	LIM and calponin homology domains-containing protein 1 OS=Xenopus laevis OX=8355 GN=limch1 PE=2 SV=1
Q3UH68	LIM and calponin homology domains-containing protein 1 OS=Mus musculus OX=10090 GN=Limch1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR003096	Family	Smooth muscle protein/calponin	Interproscan
IPR050606	Family	Calponin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47385	CALPONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan