Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g11881.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000013:4843469...4848837
NR annotation: XP_027043904.1, HIV Tat-specific factor 1 homolog [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O43719	17S U2 SnRNP complex component HTATSF1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1
Q5RB63	17S U2 SnRNP complex component HTATSF1 OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1
Q8BGC0	17S U2 SnRNP complex component HTATSF1 OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034392	Domain	TatSF1-like, RNA recognition motif 1	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034393	Family	TatSF1-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15608	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005684	Cellular Component	U2-type spliceosomal complex	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13093	HTATSF1; HIV Tat-specific factor 1	-	Spliceosome	ko03041	deepkoala