Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g1189.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000012:1219495...1230191
NR annotation: CAH3124645.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g1189.t1

ATGAATCTTTTACCTTCATCTACAATTCGGCTGATCGCTAGTTCACAAGTGATAACCTCCGTTAGCTCAGTAGTGAAAGAACTGATCGAGAATTCTCTTGATGCTGGAGCATCGAGTATTGAACTCAAATTGGATGGCTGGGGATTGGAAAGAATTGAAGTTCGAGATAATGGTTGTGGTGTGAAACCCGATGATGCTCCCTACTTGGCCAAACCCCATTACACATCAAAAATTTTAACTGATGATGACTTGAAATCCCTGCAAACGTACGGTTTCCGTGGTGAGGCTCTAGCCTCACTCTCATCTGTCAGCAATTTGTCTATATTGACAAAGACGAAATCTGAAGAAGTTGGCATGTTGTATACATTAGAACGTGATGGGAAGATTGTAGCCAGCAAACCAAAACCTACGACAACTGGGACAACAGTAACAGCAGCAAATTTATTTAAAAACCTCCCTGTGAGAAAACAATTTTCAAGCAACACCAAAAAATGTAAAGAAGAGTTGAAAAGAGTGGAGGACTTGGTGATGGCATATGCAATTATACGTCCATCTCTGAGGATCATTTTGCGTCATAACAAGGCAGTCATCTGGCAGAAGAGTAAAGTTGCAGATGAGCGAACAGCATTATTGACTGTGTTTGGAACATCTTTGTTGGCACAAATGGGTTCAGTAGAATATCATGATAATGAACAGAGTGGCATTCATATACTTGGATACCTTCCAAGGCCAGGATCTGATATGGAAGTTACAGGACGTGCAGTGAATGATCGATGTTTTATATTTTTTAATGGAAGGCCTGTTTACATGAAACAAATATCTCAGTTGATCAAGCAGTACTACAACAGACAAGCAACTGTTGCATCAAACAGATATCCTGTTGCTTTCCTAAGCATCACGATACCTCCTGAAGGCCTGGATGTCAATCTGGAACCCAACAAAACTAGTGTGATGTTAACAAACCAAGATGAACTAATGACAGTTTTGACAAAGCTGTTGGATGAGTTTTATTCAGAGGAGAACAACACACTCCCTAGTTGTGATGTTGCTTTAGAGAACAGAATAGTTGCTACTGATAAACTTGGTGACATTACTAACACTTGTAGTATGAATGGGGAGATAAGAACCAAGACGTCTGGGGATGCTAAAGCAATAAACAATCAACAAGGCATGAGTATTCAATTGGACAGCAACGTTGTACATAATGACATGCAAAACAAGGAACAAGATGTTGACAATAACCATAGTAAGCTAGCAAACATTTTTGGTACAACTTACAATAAAATCCCCACAAGTACTTCAAGCAAAGAGAAAGATTTGCTGCTGGAGGAATCATCTTGTCATGAACCAACAAGTCAAAGCAGCCAAGGGAAAGATGCACTAAAATCTTCTACTCAATCAACAGAAAATGGTGAATCAGTAGATGACGTTCCTGTAATATGTTTATTTTCCCCGTTACAGAAAAACTCAGGGATTTTTAATAACAAAGACTCATTCCAGTCAAATATTTTGCCATCTAAAGCACTCTGTGAGTCATTAAGTGACAAGACCTTGGCTGAAATGAATGAATCAGTTAATAATATTGACAAAACATTAGTTAATTCTTTCAAAGAGATTCCTGGAAACACTGCTGAAAATGGTGGCATTGAAGTTGCTGAAAGAAATTCAGTTTTGAACAATGCTAATGGCAACAAATCAGTACTATTTGCTAAAACAACTCCCTCTGAAAATGGCCCAGATGCAGCCAATAAGGAAAAATTACTGGAAAAACAACAGGAATTGTCTGGGAATAAAAGTTTGACATCTGCTGCTGCTAGTAGTCCTTCAGAGAGAAACTTGTTTTCACTTAGTCTGGATGATTTGTTTGAGGATTCTGACTTAGATACCACTGGTCCATTGAATGATGTTTACTCTGCAAAGAAGTCTACTCAACAAAATTTGACGTTGACTTTGAGTAAAGAGAGAACAACATGTGGTGAGGAAATCTCTAAAGGACATTCATTTGAAGGCACTAAGGTGCAATATACTGACAAGCAATGGAGTATGGGAGGTGGAATTGTCGACAAGCATGGGAATCCTGTGCAGCCTGTGTCATTAGTGACCCCTGGTCCTTTGAGAACACTGTCTTTGAAAAGGACTCCATTACCTCATCTTGGAAAGAGGAAACACTCATCCGAACAGGACAAGTCAAGGCTGTCCCTATCCAGCAAGAAGATAAAGAAAATGCCAGAAATAACTAATCAACCCCTGATAAACAAAGTGATGTCACCAAATCCTCTTCAAAGAAAACTTCTCTACAAGAAAAAGGAAGTTCAGTTTAGCCTGGGTGACTTAAAGAACTTGGCAAAAAGGAGAGCTAAAGTAGCAAGCAATTTAGAGGATCATTCCAATACAGACCATTTGATTGGTCGGCTGGATCCCTGGGGAGTTTGGCTAATGCAGAAAGGAAAGGATCTTGTTTGTGTCAATCAGTACAGAGTACAAGAGCAGCTTCTCTTCCAACGGCTGATGGCTTGTCATTCTCTTCCAAAAGAAAGGCTGGATCATCCCGTAATTTTAAATGAGAGAAGTGTTGGTGGTCCAGATTGTTGGAGAATGTTGTGTAATTTGAGTGTCAATTGTGACCCACCAGACACCACAAGATGGATCGATGACGGACGACTAACAGCAAATGGATTCGATATCTGTTTAAAAAACGATGTTGAAAGTGGAGACACCAAAGTGGAGTTACATAGAATATCTACTAGCATACCCTTTTATGGAGTGCCAGATTTGGTAGAAGTTCTCGAGCTTATTTGTCAAAAGGACGGCGGCGATTCCAATTCTCTGTCAAAGTGCCGACCTTTTAAAGTTATCCACTATCTCCAGGGTGAAGCGGTTCGCGTTGCTCGTTCGCTCAGTTCCCGGATGAACAGAAGTGAAGTGGATGAGCTACTATCCCGAATGGAAAAAGAAATTCCTCAGGATTTGAGAAAATGTGTGCATGATCGTTCATTTTTTTTAACAATCGCGCAAATCCCGGAATGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g1189.t1

Protein

Uniprot

Uniprot term	Description
P54277	PMS1 protein homolog 1 OS=Homo sapiens OX=9606 GN=PMS1 PE=1 SV=1
Q941I6	DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana OX=3702 GN=PMS1 PE=1 SV=1
P54278	Mismatch repair endonuclease PMS2 OS=Homo sapiens OX=9606 GN=PMS2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01119	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR002099	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR013507	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014762	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0032389	Cellular Component	MutLalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10864	PMS1; DNA mismatch repair protein PMS1	-	DNA repair and recombination proteins	ko03400	deepkoala