Detailed information of Pocillopora_acuta_HIv2___RNAseq.g12019.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000020:2275943...2292897
NR annotation: XP_027037783.1, tRNA (uracil-5-)-methyltransferase homolog A-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IZ69tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A PE=1 SV=2
Q8BNV1tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a PE=1 SV=2
Q96GJ1tRNA (uracil-5-)-methyltransferase homolog B OS=Homo sapiens OX=9606 GN=TRMT2B PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05958tRNA_U5-meth_trtRNA (Uracil-5-)-methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045850FamilytRNA (uracil(54)-C(5))-methyltransferase, metazoa typeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR010280Family(Uracil-5)-methyltransferase familyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR030390Active_siteRNA methyltransferase TrmA, active siteInterproscan
IPR034262DomainTRMT2A, RNA recognition motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45904TRNA (URACIL-5-)-METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15332TRMT2A; tRNA (uracil-5-)-methyltransferaseEC:2.1.1.-
Transfer RNA biogenesisko03016deepkoala

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