Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g12133.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000009:542151...548003
NR annotation: CAH3116549.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O35704	Serine palmitoyltransferase 1 OS=Mus musculus OX=10090 GN=Sptlc1 PE=1 SV=2
Q3MHG1	Serine palmitoyltransferase 1 OS=Bos taurus OX=9913 GN=SPTLC1 PE=2 SV=1
Q60HD1	Serine palmitoyltransferase 1 OS=Macaca fascicularis OX=9541 GN=SPTLC1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR050087	Family	8-amino-7-oxononanoate synthase class-II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004758	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0046512	Biological Process	sphingosine biosynthetic process	Interproscan
GO:0046513	Biological Process	ceramide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00654	SPT; serine palmitoyltransferase	EC:2.3.1.50	Amino acid related enzymes	ko01007	deepkoala