Detailed information of Pocillopora_acuta_HIv2___RNAseq.g12605.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000004:916235...926902
NR annotation: XP_022801834.1, pre-mRNA-splicing factor SYF1-like [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9DCD2Pre-mRNA-splicing factor SYF1 OS=Mus musculus OX=10090 GN=Xab2 PE=1 SV=1
Q99PK0Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus OX=10116 GN=Xab2 PE=2 SV=1
Q9HCS7Pre-mRNA-splicing factor SYF1 OS=Homo sapiens OX=9606 GN=XAB2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045075FamilyPre-mRNA-splicing factor Syf1-likeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11246PRE-MRNA SPLICING FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000349Biological Processgeneration of catalytic spliceosome for first transesterification stepInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0071014Cellular Componentpost-mRNA release spliceosomal complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12867SYF1, XAB2; pre-mRNA-splicing factor SYF1-Spliceosomeko03041deepkoala

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