Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g1267.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000012:2290402...2309095
NR annotation: XP_027036163.1, uncharacterized protein LOC113664736 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g1267.t1

ATGGGGCAAGAGTTTAACAAACAGGTGCAGCCTGAAGATGACCTCGTGGTTTTAAAAAAGTCTACAATTCAACCTCCATTACCAAAGCATTTGTACCAAAAGGGTCCTTTGAACAGATTTTCAGATAGTGAAGTTCAAAGTATGGTCCATGTTTACCAAAACTTAGCAGCTCTGTCTCCCAGGGACAAACAAATTGATAAGAAAACATTCATGCACTATTTCCCATTGGATGGAGTTCTGGCAGAAAGGCTGTTTGTGGCTTTTGATAAAGACAGAAATGGACATATTGACCGTGATGAATTTTTAGGTGGACTTGCTCTATGTTTAAGGGGTTCCACAGCTGAAAGAGGACAAATTATCTTTGACATGTTTAACCTCGATGGGACAGACGGAGTGAGTGTTTCCGAGATCAGCGTGATGTTGAAGTCCGTTCTTTCCGCCGCCGTTAGAATCATCCATGTTCGAGAGGGCCAGAGTTTAGATGCCGATGACCGCGTGGCGTTAACAGATGTTGATAATGAAGTAGAGAACCTTGTCAGTGATGCGGTCAGCCAATGCGATGAGAGTGCGAATGGAAAACTGACCAAGGCAGAATTCGTAAGCTGGATGAGAAGACACCCTCTCATTGTGGACTCGGTATTTCAGCATTCCAGTATTAAGGACAAACAGTTCAACACAAGATTACAACATGACCGTGGTCAAAAGAGCCAGAGGCCACCTGGGTTTGTAACAACAACACATCAGGGAGCACGGCAAACAGAACTGTTGAGCCAAACATGGGTTGATGGGCTGCAAGAGAGCGTTGATGAAGATGAACCTGTGTTCAACGGTAGTTATGCAGACGCAGAGTATCTGTGGAGTCCAGTCTTCCCAGCTAGTCCTAGCATGCCTTGCGCACGCAGTAGGCACTCAGTGTGTGTTTGGGGCGGTGGTGTGTTTGTGTATGGAGGTCGGGGAACTAGAGGAACTCTTAAAGACTTCTGGAGATACGATATAGCCAATAACACGTGGAGCAACGTAATAGTTGAAGGCGAGTTCAGACCGCCATGCTTACAGGAACATACTGCACTCACTTACAAGGGCAATATGTTTATATTTGGGGGAGAATTCACCTCAACCAACGAGACGCCATTGTGGACATTCAACTTTCGTGCGAGGGAGTGGAGGAAACAAGCGGCAAAGTCATGGGGCCCAGGTACGCGACGGTCCCACACGGCCGTGATTCACGAGAGTTCGATGTTCGTGTTTGGTGGTTACATTGATATGAGAGGTGCCAGTGATGAACTTTGGCAATACGAATTAGACACTGCGAGATGGGTCAGGGTCAAATGGAAGAGAGAGGGACCATGCCCTCGTTACAGTCATTCAGCGGCTGTAGGAGCCGGTGGCATGTGGGTGTATGGGGGCTTGGAAGGTCTACAGTCCAAGAACGATCTGTGGAGATGGAGCTTTGTGAGTCACTCTTGGACGCGGATAAAGAGCCGAGGAGGTCCGCCGGCTTTGTTTGGTCACTCTGCAGTTAACGTTGGAGAAGGCATGTTGATATTTGGAGGTGAAACTAGCGACGGTGCTTTGCTCAATACAATATGGCGGTTTGATTTGGGTGCCCGCACGTGGAGCACGGTTCGTCCACGTGGAGACATATCCCCACCCGTCCGTAGCTGTTTCTCAGTAGGAGTAGTTTCTTCGTCCGCTTTTTTTTCCATTCGACCGTCCACGGCTCACTCTGCCCCACCTTGCACCCCCATGCCTTCAGGCTTCTTGGGAGATGAGAGGCTCAACAGCAGGCCGTCCACCACCAGGCCGGAATCGTGGTGTGAATCAGTTGCTCGGTGGGACAGGTCTTCAGCATCACTGGGTTCTCTTGACTCCACGGTGCCGTTTCATAGTTCTGGGTTAAGTGTTAGCGACAATAAACGCAGTCAAGCTCGACCGGCGTCCATGTTTAGTTCAGAGGTGTACGAGAATTCAAGAGGAATGACTCTTTCAGATGATTCTCTTCATCCACATCCGAATCAAACTACTGCACAAAACGATCGTCCTGTTAAAGCACACACTCTTCCAGCACATGGTGTCACCTCGGTTAAAAAAAGCCGGGTGTACAGTCAAGAACTTTTGAACGTCAATTCTCCTGTTAGCGCCGATGCAAGGAGAAATTTAAGCCATCCATTTGCCTGTTTATTGGTTCTTGGCGGCAAGACGCGCACACAGGCGGATTTGGGAAAAAGCATCGACATATGGCGGTGTGATATCGATCCAGAGAAGAGACACCCAACAGAGCGAGTGGAAAAGATCGTTGTGTCTGGCAACAATCACATGACTACGCCCACTGTTCGCTACTTTCAGTTGGAGCATTACGATGACATGGACACTGAATCAGTGGGAGGCGATCTGGTCTTAGCAGACTTGTCTGATAGCGATACGCGTAGTGTTGATTTCCTACTGGACGATTTCCGCTTGGACGCACCACATGGTGTCCCAAAAGTGTCCGTGTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g1267.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23244	KELCH REPEAT DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan