Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g12734.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000004:2330283...2339468
NR annotation: XP_027055637.1, parafibromin-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5ZLM0	Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1
Q6P1J9	Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1
Q8JZM7	Parafibromin OS=Mus musculus OX=10090 GN=Cdc73 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05179	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	Domain	Interproscan
PF16050	CDC73_N	Paf1 complex subunit CDC73 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031336	Domain	Cell division control protein 73, C-terminal	Interproscan
IPR007852	Family	Cdc73/Parafibromin	Interproscan
IPR038103	Homologous_superfamily	Cell division control protein 73, C-terminal domain superfamily	Interproscan
IPR032041	Domain	Paf1 complex subunit Cdc73, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12466	CDC73 DOMAIN PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0034402	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15175	CDC73; parafibromin	-	Transcription machinery	ko03021	deepkoala