Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g13227.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000004:8423147...8436659
NR annotation: XP_027058821.1, ER degradation-enhancing alpha-mannosidase-like protein 3 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g13227.t1

ATGAGTTGGTGTCGGTTGTTATCGTTGGTTGCATGTCTTAACCTTGTTTATGCCGGTGGCGAATCCAGTCATTCCTCGATGACACCCGAGGAGAAAGGCACGATGAGGGATAAAGTGTTGGAAATGTTTCACCATGCCTACAACTCTTACATGAACCATGCATATCCTGCTGATGAGCTTATGCCACTTAGCTGCAAAGGTCGTATAAGAGGTGTAGATGCCAGTCGTGGGGATGTTGACGATGCTCTTGGAAAGTTTTCCTTGACATTGATCGACACTTTGGACACGTTAGCAGTTTTAGGAGAAGTAGAGGAGTTTGAAAAGGCTGTAAGGCTTGTGGTCCAAGATGTTTCATTTGATAATGATGTAGTAGTTTCAGTGTTTGAAACAAACATAAGAGTTCTAGGGGGTCTCCTTGGAGGTCACTTTGCTGCAATGGCATTGCAGAATTCAGGAAAAGGCATGTTGTGGTATAACAATGAACTGGTGGATATGGCAAAGGAAATTGGCTATCGGCTACTTCCAGCTTTCAATACCTCAACTGGAATACCTTATCCACGAGTAAACCTGAGGTATGGCATCCATCATCCATCATCAGGGACAGGCAGTGAGTCAGACACCTGCACAGCCTGTGCTGGAACAATGATCATGGAGTTTGGTGCTCTGTCTAGAGTCACAGGGGATCCAATATTTGAGCAAAAGGCCCAGAAAGCTATGGAAGCAATCTGGATCCATCGCAGTCGAGCGAGTGATCTAGTGGGTACTGTTATCAACATTCATAATGGCGACTGGGTCCGAAGAGACAGTAGTGTTGGTGCTGGTATTGACTCATATTATGAGTACTGTTTGAAAGCTTACATACTCCTGGGAGATGACAGATACCTGGAGAGGTTTAACAGGCATTACAAGTCAATAATGCAATACATCAATCAAGGTCCGCTGTTCTTAAGTGTTCAGATGCATCAACCTGACAGAACAGCACATGCTTACATGGATGCATTGCAAGCATTCTGGCCTGGACTTCAGGTACTAAAAGGTGACCTTAAGAAGGCCATTGAAACACATCAGATGTTGTATGAAGTCTCAAAGAAGCACACCTTTCTACCAGAGGCATTTACAACAGATTTTGAGGTTCACTGGGGGCAGCATCCTCTCAGACCTGAGCTTGTAGAAAGCACCTACTTCTTGTATGAGGCCACAGGAGACCCATATTACCTTGAGGTTGGAAAGAATATAGTGGGAAAGATTAATGAACATGCCAGGGTGCCCTGTGGTTTTGCTGCTCTTCGAGATGTCAGGACATTGAGCCATGAAGACAGGATGGACTCGTTTGTTCTTGCAGAGACGTTCAAATACTTGTTTTTATTGTTCAGTGAAAAAGAAGATCTTGTTTTCAATATGAACCAGTTTATTTTTACAACTGAGGCACATATCTTGCCTCTTAGTTTGTCCACTATGGCTGTGAATACATCAGCATCGCAGGAACTGAAGTACAATCTTACCATCAGCTCAGACAATGAGCATGAGTACACATGTCCTGCTACGCAACACAAGCAAGGTTCAAATGTTAAGTTTGCCGAGGAGGTGCGACGCAACAGCAGGGCTCAAGCGCAGGGAAGCTGCCCAAATAGGAAACCGCAGCAGGCTTTTGCTTTCAGCTCGAACAAGCCTCCAAGGTTGAGAGCCGAACAATTTGTTCCAGGAAATCAAGAGCACATTAACGTACTCAAGGCCATGGGTATCACTGTAATTCAAACCAAAGATGGCAGAATAAAACTTATGCAAACTGCTTCAACGGCTGAGTCAGATCGTGATGCAGAAGATGGCATCAAGTTCATGCAAGAGATGATTGAATTGGCAAAACAACGAAATGATGAGTCAGCTGTTCAAGAAAAGCCTCGTGTGGTTCAGCTTATGTCTGCTCCTTACAAAGGAGATGTGGTTCTCAACGCTTGTCCAGCGCACTTTGGTCTGGATCTGAGCAAAGGAGATGTAGGAATGGGTGCAGAGGTTTCTATAGCTGAGCCTATCAAGGCATGTTCTTCTGTTTCAAATGCAGAGGAACTGAAGCATAGAATTGCTATTATGGAAAGGGGCGAATGCATGTTCATCGATAAGGCTCGGCATGCTGAGGCCGCCGGGGCAGTTGGTGTGATCATCATTGATAATAACGAAGGTAGTTCGAGTGATACACAACCAATATTTGCCATGGCTGGTGATGGTTCCGACAATGACGTGAAAATACCAGCCGTGCTTCTGTTCAGCGAGGAAGGACGCATACTAAAGAACGCCATAGCTGCAATGGAGGACTTAAATCAACGGCTTACGGTCCGTTTGGCTTCTAAAGCCACTGGAAAACCAGCTAAGGAAGAGGCTCTAACTGCCGGACAAGCTGACGTGCCGTCAACTACACAAGAAAAATCAGAGAGCACAGAGTCTGTCAGTGAGGAAGAAAGTCCACCTCCAAGTGACGATATTAAAATTCAATTATCTGAGGAAAGTAAAGAAGTTCACGATAGTAATACAGAACAAATCGAGGCCTCACAAGGTATGGAATCACATCAGAAAGCTGAAGACGGCAAGGCATCGACAACATCAGAAAATTCTGACCCGCGCAATAGCGAGACACCGCAAAATCCGGCTGTTGTGTCAGTGGGACAAGACGAAGTGTTTTGTGCCGCTACCGGCAAACCTTGTGCCATACCAAACCAAACTCACGAACAAAGCGTTGATTCAGCAATTCTGGCTGAAACTTCAAATAGCGACAGTTCAGATTCTGAAACAAGCACGCTTTCTGAGAATACCGACGTCGACAATGGAGGTGAAACAAATAGCGAGGCAATTCAATCGAGTAAAAACACAGACGCTGAACTAAAAAATGAGCCAAGCGCAGATGTAGCAGGAAATACGAGCGATGAAAACGTTCTTGACGCTGCTTCGAAAAGGACTTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g13227.t1

Protein

Uniprot

Uniprot term	Description
Q6GQB9	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Xenopus laevis OX=8355 GN=edem3 PE=2 SV=2
Q2HXL6	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Mus musculus OX=10090 GN=Edem3 PE=1 SV=2
Q9BZQ6	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Homo sapiens OX=9606 GN=EDEM3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02225	PA	PA domain	Family	Interproscan
PF01532	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382	Family	Glycoside hydrolase family 47	Interproscan
IPR003137	Domain	PA domain	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR044674	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR036026	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004571	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004559	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904380	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10086	EDEM3; ER degradation enhancer, mannosidase alpha-like 3	-	Lectins	ko04091	deepkoala