Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g13567.t1a in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000005:242138...256685
NR annotation: CAH3145697.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g13567.t1a

ATGGCTAGTAGTGTTGCCAAGCTAAAACCACTGTCATCAGTGATCGCCGAGCCCGATGAAGTCCTCGTACAAAATATGGAAGAGACTGAAGTGCTAGCGGGCCTAGCCAGAAACAGTGACTCTGCGAAGAAAGCTGACATTTTGGACGAACTCAGAGCAAACGCACGGCGAAATGGTGGTCGCTTACAATTTGACGATCGACATGGCTTATTTCAGGTTCTGCAAGAAGCTCTGGCCGACTCAGATTCTAACACCCGACTATGTTGCATCGAATTCTTGTGTGAAATAATTCCTGAGTTTGGAGAGGATTTGGATAGTTGCATGACACTTGTTCTTCCTCTAATCGTGTCAAACATCGGAGACAACCAGGTGTCGGTGAAAAAATCCGCTATTCAGACCCTACATGTGTACATGAAACATTCTTCGCAAGTCACTGCTGTTCTTAATGCAATCATCGATCATGGCCTTGAAAGTGACAACAGAAGGACAAGAACAGAAAGTTTAGTAGCCTTACCAATTCTCATTATGCCGAACCTGGCCCATGAAGATCTGTTTACGTTGACAAAAGCGCTTGTTGGGAAGTTAGAAACTTCGTCGAGACCCGAAACTTCACCTGCTGTCATTTCTCTGGAAAGGATACGAAATGTTGTTGGGTCCACAATTTTCGAGAGCTACCTTCATCGCTTATCGCCTGATCAACAAAATTTATGTGTATCAGCGCTTCAAAATCGAAGCGCCGATCCTGTTAAAGAATTAGAGTTGCTCGGAGGTCGCAAGGCCAAAAGTGCCGGTCACTTGAACACGAACGGAATCATTTCAGACGTTGAGCTACCAGAGAGAGGGACCGTGCTCGATAGAGGTCACACGATAGCCGTAACAAATACAGATAATTACCCTGATGCGAACTACGGACTGCTCGAGTTTGGTTTTGTCCCTGTTTCTGTGATGTTGAAACTAAGAGATCAAAGTAATTGGCGGATACGAGCCCAGGGAATTGAAGAACTGAAAACTCTTATGGGACAGTTAACTGATACAGAACCTATTCAACCCAATTTGGGACCGCTCTTTGCATTACTGCTTGGCTTCCTGGACGATGTGAACTTTAAAATTGGTGTCACCAGTCTTCAGATTATTGGATTGCTGGTTGCTAAATTGGGGGTTGGCATACGTCCTGTTCTTAAACCTTTGCTGTTAGCACTATCTAACAAATTAGGCGACAATAAGATTGTAATTAGACAGGAAAATATGAAGGTGTTCATGCAGGTTATGCAAATTCTTTCTCCAAAGTCAGTTTTAACTGTGTTGACATCAAATTTACAACATCGAAACTCAAGAGTGCGTGAAGAAACTGTAAATGTTTTCATTGCTGCACTACTTACATTTCCTAGTTCAGACTTCAATCTTCCAGAAGTGACCAATGCAATTGCTCCAGTATTAGTTGACAGTAAAAGAAGAGTGCGACAAGCAGCACTGGAGGCTTTTGCAGTTATAGCACAAGCAATGGGTCCTGGGCGCATTCAACCTGTAGTGACAGCAGTTGATGCCATTGAGCTCACAATGGTTGGTGATGGTGTAATGGCAGCTATTACTGCCAGGTTGGCCCGGAGGCAGCTTCCTCGCTTGAATAGGGATGGTTTGGTTGAATATGCTGTTCCTATGCCATCATCTGGAACAATCAGAGGTCAGAGCAACACACCACGTGGAGCTGACATTGACTGGATCTTAGCAGGTACTGCTGGAACAGGCTCAGCCGATCCATCAGGTTCCAGTCGCTCCACACCAGGACCTAATGATTCATTTTCCATGTCTGGGCCAAGTCCTCGAAGATTCTTTAGTGCAGGAAAGAATCGTTTACCCTGGGAAGGTGACCAGGCCAAGGATGTTACTCAGCAAGCTGCTGCTGCTGCTGAGAATATTGAACCAATACGACCACCAATGAAGCTGAATTCATGGGCTCCCATGGAAATAGTCAATGATCGAGCAACAAAATCCACCTCTCAGCCACGAACGACATCACTGACAACTCCACCAAAGTCAAAACTCACCACATCATCCTATGCTGAAAAGTATCATGCCATGAGCATACAAAAGGCAAACCAAGCTACCGAACGTCGTGTCCCTAAAGCTACTGAAAACACACCAGGGAGCTCTTATGCTGAAATGCACCGAGCAAAGGCTAAGAAAGACAAATCTAAGGTTGTTAATCCTGGTGTGAATCTCAATCAAAATGCTCCAGCTGGTACTGTGAATAGTTATGCTCTACTATATAAGCGTGGAACAATTTCCTCAAAAGCCAAGGCTAGTAATAGTGCAGAACCAGCAATTGGAGATCACACACCCAAGGAAGGTATTCCAAGAGGTGCACAGTCAGTCACACCTACTCCTCCATTTTCTCTTCAAAGTTCCTTTTCACCGGGTGATGAAGAACCCTTCCTCTCATCACAGAGAAAACCTTTCTCAATGTCACTGTCCAGCTCATGGCCTGACTGGACTGAACTGAAAAGTGAGATGAAACCTTTTGGAAGACTGTCACCTGTGTCACATTCTATACCTATGGACATGGACTCATCTGGTGAGCAAGGGGAGGGTGAGATGAAAAAGAATGAAGTACCTCAGACACCCATCCACATGAAGCCTCAACTTGCACGATCAGCATCAAAGACTCGAGGCTTAAGGGCTACTGAACTGGGAGAAACTAAAAAGACTGAAATCCAGTCAGGTGTGATGGACTTCCTTGAAATGACACCTACACGCCCAACACAACTGGCCCCTGTTAAGGCTGGCAATTTTCCTCCTCAAGATGCTTTTAGTCAAGTTCACAAACAAGCAGAGTTGAAGAGAGCATTGAAAATGTACTCTGTGATCAGTGATGGTGAGGATGGAAGAAGTCGTAGCCCGTCACCCTTGGAGAATAACAATGATCTTCCCAGCACTCCACTGTTTGAAAAAGGAAGATTGTCAAAACTCCCCACCAAACCTGAATCTCCATTTGACAGTAAACCACGAATTGCAAGAACACCAATTCACTTTAGAAGACTCTCAGCAGAAACTTCTTTGCAACTCCAGAGTCCAACACCTTTACCCCATAAGTTCTCAGACCCAGACGATGCAGGTCTTGGTGTGACAGGTCATGGGCTTCTGTCGACCACAGGGGGGAGGAAAACTGAATATTCACCTCTGGAAAATGGTGTGCATAATGATGATGATGATGATAAACATAGGAGATCTTCAAGAGTGGGTAGCAGCTTCTCAGGGAGAGACGATAATTTAGGGATGGGAAAAGTGGAAGTCGTTGGTCAGGGGCTGTTGAGACTGGATAAACAGCTCAAGGCAGAGGATGAAACGACCCAGTTACAGTATGAGACAGAAGAGTCTGATGAAGGAGTAGAGGATGATGACGGACGTGATGAGGAGGAAGATGAGGAAGAGGAAGAAGATGACCACGAGGAAGAGGAAGGTGAGGAAGGACAGTTAGAAGACGAAGACGAGGACGAGGAAGCAGACAGTGAATCGGACAGTGAGGAAGAGGAATACCCTACTCCATCAGAATCACAAGAGGGTGACACCTCCACAGGGACAACAACAACACCAACGAGCACTACAACATCAACCATCAAGAGTGAAGGGAGCTCAGATAGCCTGGGAGACAGCGATGAGGACAGTGACTCGGGAATCAGAGAGAACATCAGAGATATGACACCGAAAACCACGAGGAAAAGTCTGTCTAAATCAACCCGAGAGAGGATGGAAAGAAGAAGACAAGAGGAAGAAGAAAAACTTCAGAAGGAGCAGGAAAGGTTTGCAGAACTTGAGAAGGAGCGTATGAAGCAGCTGCAGGTTCAGCGAGAGGAGGAGGAGAAATTGCGGCAGAAAATCTTAAAAGAGCAAGTAGAACTTGGAAAGATGCTTAATAGGAAGGAAAAAGAAAGGGAATTAGAACGGCAGAAACAGCAGCAGCTGCAAGAGGAATTGCAGAGGCAGGAAAAGGCTCTTAGGGATCGGCTGCTGAAACAACAAGAAGAGTTGGAGGAAATTGAACAGGAAAAGCAGCGTGAGAGAGAAAGGAGGCTGAAGGAGAGAATGATACAAAAACAAAAACAAAAAGAGGCAAAGTTGCTTAGAGCTGAGAAAGAACGAGAACAGGAAGAGGAAATAAGGAGACAACTGGCAGAAAAGGAAGCTGAGCTGAAGAAGAAGCAGTTACAGAGAGCCAAGGAGCTGAAAATTGCTGCAGAACCTGAAAATACGAATCTTTCAGTATCAGGGTCCAGTTCTCCACTGAAGTCTAACAAAAAACCACCCACAGGAGGAACTCCTAAAAAGAAGGCACCTGTTTCATCGACACAGTCTGAGCGAGATTCTAGTTATGCGGTTACAGATGATCCATCAGAGATCAGACGGCATCATGCAGCATCCGCAGGCAGTACTTCAGCTCAGTGCTGGGAAATCAGTTTGGACGATCTGCAGCCCTTCAATAATCCAGACAATGCTCTGCGAGAAGCAATGAAGTATCTAGCAAACACAGAGGATTGGGAGATGAAGTGTGAAGGAATTCAAGGAATTCGTCGTCTTACTAAACATCATCCTGAAGTGCTGGTTTCACAGCTACACTCGGTGACTCTTGCTATCATAGCAGAGGTTAAAAATCTTCGATCACAAGTTTCTCGTTCGGGCATCTGCTGTCTTGGAGACATGTACACCATTCTTGGAAAGAACATGGATAATGAACTGGAAGTCACTGCTAAAATCCTACTGGCTAAAGCTGGTGAATCGAGTGGATTTATTAGAGAAGACGTGGAAAAAGCCTTGACAGCCATGGTTTTTAGTCTGACCCCAACCCGTTTAATAGTCGCACTTATTTCTGGAGGAGCCAGCCATCGCAACGTAACCGTACGCAAGACCACTGCCCAGTTTCTCAGCATGCTCGCGGACCGCATGGGACCGAGTCGAGTGATGAGCGGAGCCAAAGATGTCACTGAGAAAATTCTTCCTACTACAGCTCAATTCCTCACAGATGGTGGACAGGAAACTAGATACTATGGACGCAAGATTCTTTCGTCTATATGCGATCATCCCGAGTTTGACAAGCACGTGTCTAAACACGTGCCGTCCAATCTGCAGAAGAGCGTGCGTGACACGGTGGACAATCTTAGAACAAAGGGGCTGGGTGAACCCCCATCAGACCTTTCCTCCTCCGCACGGCAGCGGAAACCAGCATCTGGTGGTGGAGGTTCACGAAGCGGTGGAGTGCGAGGATCAGTGGCGGCATCTCCGTCCTCAAATTCCAGCTCGAGAGAACCTTCAAGGAGTGGCAAACCCGTGACACGAGATGGATTGATTCAGGGGGAAGAGATGATCCCAAACTTAATCAACTCTCTACAGGCCAGTGATTGGAAAGAACGACAACAGGCGATCGATCAGTTTGTTGATTTAGTTCAGTTAAACCCGGATGGCTCAGGACAAAAGTTTACCAAGGTTTTTGATGCGTTTATCCCTCGTCTCCAAGACTCGAATAGCAAAGTAAACCTGTATGCCCTTCAGTGCCTTCCCAAGATCCTTCACTGTTTAGCCAACCAATCAACTGCTCTGGTTCCTCCAATGGTTGCTGCGTTGACATCTAACTTTGCTTCCAAGAACACGAATATTTTCTCTGCAGCAGAGGAAGCTCTTGATGAGTTCATTAAACACATCGACAAAACTCTGTTAGTTCAACCATTTTGTTCAACGGCACAGTTTGGAAGCAGCCGCGTTAAACCGATCATGGTGGACAAGTTAGCAGATATCGTATCGACAGTGCACACTCGAAAGCCACAAGTAGTTTCTCGCCATATTCTTCCTCTGTTGTGGGGTCTCTTGAACACGGCGAGTAACAGCAGTGCTGGCGCCAGTAACAGTGCCCTGAAGACATCCACTACCTCCACGAACGTCCCCAATTCTCAAAGGTGTGAAGTTGAAGGGTGTAGAAGTGAGACATATATATATATCTTGAGTTACTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g13567.t1a

Protein

Pocillopora_acuta_HIv2___RNAseq.g13567.t1a

MASSVAKLKPLSSVIAEPDEVLVQNMEETEVLAGLARNSDSAKKADILDELRANARRNGGRLQFDDRHGLFQVLQEALADSDSNTRLCCIEFLCEIIPEFGEDLDSCMTLVLPLIVSNIGDNQVSVKKSAIQTLHVYMKHSSQVTAVLNAIIDHGLESDNRRTRTESLVALPILIMPNLAHEDLFTLTKALVGKLETSSRPETSPAVISLERIRNVVGSTIFESYLHRLSPDQQNLCVSALQNRSADPVKELELLGGRKAKSAGHLNTNGIISDVELPERGTVLDRGHTIAVTNTDNYPDANYGLLEFGFVPVSVMLKLRDQSNWRIRAQGIEELKTLMGQLTDTEPIQPNLGPLFALLLGFLDDVNFKIGVTSLQIIGLLVAKLGVGIRPVLKPLLLALSNKLGDNKIVIRQENMKVFMQVMQILSPKSVLTVLTSNLQHRNSRVREETVNVFIAALLTFPSSDFNLPEVTNAIAPVLVDSKRRVRQAALEAFAVIAQAMGPGRIQPVVTAVDAIELTMVGDGVMAAITARLARRQLPRLNRDGLVEYAVPMPSSGTIRGQSNTPRGADIDWILAGTAGTGSADPSGSSRSTPGPNDSFSMSGPSPRRFFSAGKNRLPWEGDQAKDVTQQAAAAAENIEPIRPPMKLNSWAPMEIVNDRATKSTSQPRTTSLTTPPKSKLTTSSYAEKYHAMSIQKANQATERRVPKATENTPGSSYAEMHRAKAKKDKSKVVNPGVNLNQNAPAGTVNSYALLYKRGTISSKAKASNSAEPAIGDHTPKEGIPRGAQSVTPTPPFSLQSSFSPGDEEPFLSSQRKPFSMSLSSSWPDWTELKSEMKPFGRLSPVSHSIPMDMDSSGEQGEGEMKKNEVPQTPIHMKPQLARSASKTRGLRATELGETKKTEIQSGVMDFLEMTPTRPTQLAPVKAGNFPPQDAFSQVHKQAELKRALKMYSVISDGEDGRSRSPSPLENNNDLPSTPLFEKGRLSKLPTKPESPFDSKPRIARTPIHFRRLSAETSLQLQSPTPLPHKFSDPDDAGLGVTGHGLLSTTGGRKTEYSPLENGVHNDDDDDKHRRSSRVGSSFSGRDDNLGMGKVEVVGQGLLRLDKQLKAEDETTQLQYETEESDEGVEDDDGRDEEEDEEEEEDDHEEEEGEEGQLEDEDEDEEADSESDSEEEEYPTPSESQEGDTSTGTTTTPTSTTTSTIKSEGSSDSLGDSDEDSDSGIRENIRDMTPKTTRKSLSKSTRERMERRRQEEEEKLQKEQERFAELEKERMKQLQVQREEEEKLRQKILKEQVELGKMLNRKEKERELERQKQQQLQEELQRQEKALRDRLLKQQEELEEIEQEKQRERERRLKERMIQKQKQKEAKLLRAEKEREQEEEIRRQLAEKEAELKKKQLQRAKELKIAAEPENTNLSVSGSSSPLKSNKKPPTGGTPKKKAPVSSTQSERDSSYAVTDDPSEIRRHHAASAGSTSAQCWEISLDDLQPFNNPDNALREAMKYLANTEDWEMKCEGIQGIRRLTKHHPEVLVSQLHSVTLAIIAEVKNLRSQVSRSGICCLGDMYTILGKNMDNELEVTAKILLAKAGESSGFIREDVEKALTAMVFSLTPTRLIVALISGGASHRNVTVRKTTAQFLSMLADRMGPSRVMSGAKDVTEKILPTTAQFLTDGGQETRYYGRKILSSICDHPEFDKHVSKHVPSNLQKSVRDTVDNLRTKGLGEPPSDLSSSARQRKPASGGGGSRSGGVRGSVAASPSSNSSSREPSRSGKPVTRDGLIQGEEMIPNLINSLQASDWKERQQAIDQFVDLVQLNPDGSGQKFTKVFDAFIPRLQDSNSKVNLYALQCLPKILHCLANQSTALVPPMVAALTSNFASKNTNIFSAAEEALDEFIKHIDKTLLVQPFCSTAQFGSSRVKPIMVDKLADIVSTVHTRKPQVVSRHILPLLWGLLNTASNSSAGASNSALKTSTTSTNVPNSQRCEVEGCRSETYIYILSY

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6A070	TOG array regulator of axonemal microtubules protein 1 OS=Mus musculus OX=10090 GN=Togaram1 PE=1 SV=3
Q9Y4F4	TOG array regulator of axonemal microtubules protein 1 OS=Homo sapiens OX=9606 GN=TOGARAM1 PE=1 SV=4
Q3TYG6	TOG array regulator of axonemal microtubules protein 2 OS=Mus musculus OX=10090 GN=Togaram2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005077 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12348 all species →	CLASP_N	CLASP N terminal	Repeat	Interproscan
PF21040 all species →	CEP104-like_TOG	Centrosomal protein CEP104-like, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024395 all species →	Domain	CLASP N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567 all species →	CLASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24886	TOGARAM; TOG array regulator of axonemal microtubules protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.