Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g14564.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000391:1871119...1878614
NR annotation: CAH3159394.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P3K3	F-box only protein 9 OS=Danio rerio OX=7955 GN=fbxo9 PE=2 SV=1
F6Y9J3	F-box only protein 9 OS=Xenopus tropicalis OX=8364 GN=fbxo9 PE=3 SV=1
Q5U2X1	F-box only protein 9 OS=Rattus norvegicus OX=10116 GN=Fbxo9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19270 all species →	FBO_C	F-box only protein C-terminal region	Family	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045464 all species →	Domain	F-box protein Hrt3/FBXO9, C-terminal	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR045118 all species →	Family	F-box only protein FBXO9/FBXO48	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12874 all species →	F-BOX ONLY PROTEIN 48-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10295	FBXO9; F-box protein 9	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.