Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g14841.t1a in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000020:2465219...2473438
NR annotation: CAH3138708.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g14841.t1a

ATGAGAAAATTAAATCTCGGAAAGCTACGTTGTTCCACACAATCAGCCGCCAAAAACCAGTCTCTGAGTGGCTCATCAGCAAGAGATCAGTCACAGAATACGATTTCCAGTTTTTTCATCACCAAACATTGCCCGGTGAACGATCCTTCCTCCAGTGAAACCGGCAGGACAACAGCTGATGGAAATAAGCTCACAAAGGGTGCTAAGAGGTGTGCCAGTAATATATCTCACAGTGAAAACAAGAGCAATCCAAGCACACATTCAAAAAGGCAAAGAATAAGTCCAAATCAGTCCATAAAGGAAGATGGAATGGTTGAAGATCATGTCACACTGAACAATAAGGAAGTACTGAGTAGTTCTACAATGGCCAAATTGAACTGCTTTAGAAAAGATTCAATCATGGCTGATTCGCAAGTTGACAAAAAGCTGAGAAATCTGCCAGTCACAGAAATATATGGAGACAGAATTGAGCCAGACAAAGATCATAAAAACAAGAGCAATGGTAGAGCTATCTATGACAAGGATGACGATGGTTCAGAACCAATGGATTTTGATGAAAGAGTTCATCAGGAAAACTTAAATATCACTAAATTTGCTTGTACATCACGTCCATCTGGAAGACCAATTCAGAACATCAAAAATGTAGCAGAAAAGAATGAAACAGAAAGATATAAACCTGTCAACTTAAGGACTAAATCTACATATACACCTTTAGAACTTCAGTTTCTTGAAATTAAATCCAAGTATCCTGATGTAATTTTACTTGTGGAGTGTGGCTATAGGTACAGATTCTTTGGAGAGGATTCTGAGATTGCTGCTAAGGAACTGAATATCACAAGCCATTGGGATCATAATTTTAAGACAGCAAGTATTCCTACCCACAGACTTCATGTTCATGTCAAAAGGTTGGTCAGTAAAGGCCATAAAGTTGGAGTAGTGAAACAAACAGAGACTGCTGCACTAAAGGCTGCTGGAGAAAATAGGAGTAAAGTATTCACAAGAGAATTGAAGGCATTGTATACAAAGACCACCCTGGTTGGGGAGGATATGAAGACTATGGAAGATTTAGATGAAGCAGATTCTGTGGAGATGGGAAGTGGATATCTCATGTGTCTTGTTGAAGGTGATCCACAGGACTCTAAAATAAGCAGTAATAGAAAGCTGTTTGGATTGGTGGCAGTTCAACCATCCACTGGTGATGTCATCTATGATGACTTTCAAGATGGGCCAAGCTATATGGAGCTGGAGGCACATTTGGAACACATCTGCCCTGAAGAATTACTGCTGCCTGAATCCCTGACCATCAAAACAGAGAACTTCATCAAGGATTTTGTTACAAGGGTGCAAAGACCAGAGGATAGTATAAGACTTGAAAGAATGCCTGATCAATTTTTTGATCATTCTACTTCTCTGAAATGCATTACTGAATTTTATGAGGAACAAAAGCCAGTGAGGAATGAAGAACTCTGCAAAGTAAACATTACCCAGGAACTGCAGGAAAACAGTTCAGCATTGGAAATAATCCTCAAGCTTCCCAAATCAGTTCAGTCTTGCTTTGCTGCACTTGTCAAATACCTTAAAGACTTCAGGCTGGAAAAAATTTTTAGGTCAATAAGTAACTTTTCAAGATTTTCTGTACAGAACAAATTTCTAAAATTAAATGGCCAAACTCTGAGGAACTTGGAAATATTTAAGAATCAGACAAATGGTAATGAAAAGTCGTCACTCTTCTGGATCATTAACCACACAACAACTGCATTTGGGCGAAGGCTTTTAAAGAAATGGATTTCACAACCTCTTCGAGATGTTAGTGAGATCGAGAAGAGGCTTGACGCCGTGACAGAGTTGTGCGGTCCTAGTGCATCATGTTTAGCATCCTTAAAAGGCCTTTTGTCGCAGCTTCCCGACCTGGAGAGAGGATTATGCACCATTTGCCATAAAAAGTGCACACCAGCAGAGTTTGTCACAATAACAAAATCTCTGGTAAGGATTGCAAAACACCTTCAGTCAAACAAAGATGTTGCCACGAGCAAACTTGAATCTTCACTTCTAAGAAACGTTTTCACTGAGGTGCCGACGTATTTGGAGGATGTTGAAGATTTTCTTCGACTGGTTGATGAAAAGGCTGCCAAAGACGGTGACAAAACCAAGCTGTTTTGTGATCTAACGCAGTTCCCCATGATAATGAAATGTAATTTGGAAATTGAGAAGATTCTGACCGACTTAAGGAACCATCGTTCAGAGTTTAGACAGGTGTTACGACATCCATCTTTGGATTACTGCTGTGTTTCAGGAAACGAGTTCTTAATCGAAGTAAGGAACACGAATTTGAAGACTGTGCCTGCCGACTGGATAAAAATAAGCGCTACGAAACAGGTGTCAAGATTCAGGACACCATTCGTAGAGGACAAGTTCAAACTTCTTTGCCAGTGGCGAGAACAACTGTCAATCTGCTGTCAGGAGGCGTGGCTAGAATTTCTCGCGCTCTTCTCGGAAGCGTGCGCAAGATACCGGCGTGCCGTATGTCATATCGCCACGCTCGACTGCTTGTTCTCCTTGGCAACCGTGGCCAGTCAGCGAGGTTTTACCAGGTATGGCCTGTTATCAAATGGGAAATATTTTCTATTTAATGTTGAATAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g14841.t1a

Protein

Uniprot

Uniprot term	Description
P20585	DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705	DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
Q2UT70	DNA mismatch repair protein msh3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=msh3 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF01624	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan