Detailed information of Pocillopora_acuta_HIv2___RNAseq.g15128.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000034:465208...477403
NR annotation: XP_027043538.1, DNA ligase 1-like isoform X2 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P51892DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1
P37913DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2
P18858DNA ligase 1 OS=Homo sapiens OX=9606 GN=LIG1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR050191FamilyATP-dependent DNA ligaseInterproscan
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45674DNA LIGASE 1/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006266Biological ProcessDNA ligationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:1903461Biological ProcessOkazaki fragment processing involved in mitotic DNA replicationInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10747LIG1; DNA ligase 1EC:6.5.1.1
EC:6.5.1.6
EC:6.5.1.7
DNA repair and recombination proteinsko03400deepkoala

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