Detailed information of Pocillopora_acuta_HIv2___RNAseq.g15431.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000006:4637998...4660007
NR annotation: CAH3152823.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P63154Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1
P63155Crooked neck-like protein 1 OS=Rattus norvegicus OX=10116 GN=Crnkl1 PE=2 SV=1
Q9BZJ0Crooked neck-like protein 1 OS=Homo sapiens OX=9606 GN=CRNKL1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02184HATHAT (Half-A-TPR) repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR045075FamilyPre-mRNA-splicing factor Syf1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11246PRE-MRNA SPLICING FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000245Biological Processspliceosomal complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071014Cellular Componentpost-mRNA release spliceosomal complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12869CRN, CRNKL1, CLF1, SYF3; crooked neck-Chromosome and associated proteinsko03036deepkoala

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