Detailed information of Pocillopora_acuta_HIv2___RNAseq.g16272.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000007:4904800...4913891
NR annotation: XP_027036672.1, uncharacterized protein LOC113665203 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B3EWZ5MAM and LDL-receptor class A domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ6MAM and LDL-receptor class A domain-containing protein 2 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q20191Zinc metalloproteinase nas-13 OS=Caenorhabditis elegans OX=6239 GN=nas-13 PE=2 SV=5

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08606MEP1B; meprin BEC:3.4.24.63
Peptidases and inhibitorsko01002deepkoala

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