Detailed information of Pocillopora_acuta_HIv2___RNAseq.g16433.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000021:150635...208289
NR annotation: XP_027044397.1, polycystic kidney disease 1-related protein-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B8UU59Polycystin-1-related protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q8TDX9Polycystin-1-like protein 1 OS=Homo sapiens OX=9606 GN=PKD1L1 PE=1 SV=1
E7FKV8Polycystin-1-like protein 1 OS=Oryzias latipes OX=8090 GN=pkd1l1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF02010REJREJ domainFamilyInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF01822WSCWSC domainDomainInterproscan
PF01825GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF00801PKDPKD domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035986Homologous_superfamilyPKD domain superfamilyInterproscan
IPR014010DomainREJ domainInterproscan
IPR046791DomainPolycystin domainInterproscan
IPR002889DomainCarbohydrate-binding WSCInterproscan
IPR002859DomainPKD/REJ-like domainInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR000601DomainPKD domainInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR022409DomainPKD/Chitinase domainInterproscan
IPR000203Conserved_siteGPS motifInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR000434FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR046338Homologous_superfamilyGAIN domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46730POLYCYSTIN-1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006816Biological Processcalcium ion transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04987PKD1L1; polycystin 1L1-Ion channelsko04040deepkoala

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