Detailed information of Pocillopora_acuta_HIv2___RNAseq.g16485.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000021:1977762...1994322
NR annotation: XP_027038218.1, sterol regulatory element-binding protein cleavage-activating protein-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A2RRU4Sterol regulatory element-binding protein cleavage-activating protein OS=Rattus norvegicus OX=10116 GN=Scap PE=2 SV=1
Q6GQT6Sterol regulatory element-binding protein cleavage-activating protein OS=Mus musculus OX=10090 GN=Scap PE=1 SV=1
A0JPH4Sterol regulatory element-binding protein cleavage-activating protein OS=Xenopus laevis OX=8355 GN=scap PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12349Sterol-sensingSterol-sensing domain of SREBP cleavage-activationFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR030225FamilySterol regulatory element-binding protein cleavage-activating proteinInterproscan
IPR000731DomainSterol-sensing domainInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR011044Homologous_superfamilyQuinoprotein amine dehydrogenase, beta chain-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46378STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0032933Biological ProcessSREBP signaling pathwayInterproscan
GO:0032934Molecular Functionsterol bindingInterproscan
GO:0032936Cellular ComponentSREBP-SCAP complexInterproscan
GO:0045540Biological Processregulation of cholesterol biosynthetic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26682SCAP; sterol regulatory element-binding protein cleavage-activating protein-Membrane traffickingko04131deepkoala

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