Genomic Location: Pocillopora_acuta_HIv2___xfSc0000021:2133266...2139337
NR annotation: XP_027038225.1, speckle targeted PIP5K1A-regulated poly(A) polymerase-like [Pocillopora damicornis]
| CDS | |||||
| Pocillopora_acuta_HIv2___RNAseq.g16499.t1 | |||||
| Transcript |
| Pocillopora_acuta_HIv2___RNAseq.g16499.t1 |
| Protein |
| Pocillopora_acuta_HIv2___RNAseq.g16499.t1 |
| Uniprot term | Description |
|---|---|
| Q4KMD7 | Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio rerio OX=7955 GN=tut1 PE=2 SV=1 |
| A9JTS5 | Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus tropicalis OX=8364 GN=tut1 PE=2 SV=1 |
| Q9D0D3 | Poly(A) RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Mtpap PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12874 | zf-met | Zinc-finger of C2H2 type | Domain | Interproscan |
| PF01909 | NTP_transf_2 | Nucleotidyltransferase domain | Domain | Interproscan |
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF03828 | PAP_assoc | Cid1 family poly A polymerase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 | Domain | Zinc finger C2H2-type | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR002934 | Domain | Polymerase, nucleotidyl transferase domain | Interproscan |
| IPR043519 | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR003604 | Domain | Matrin/U1-C-like, C2H2-type zinc finger | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR002058 | Domain | PAP/25A-associated | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12271 | POLY A POLYMERASE CID PAP -RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0031123 | Biological Process | RNA 3'-end processing | Interproscan |
| GO:1990817 | Molecular Function | poly(A) RNA polymerase activity | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K18709 | TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase | EC:2.7.7.19 EC:2.7.7.52 | Messenger RNA biogenesis | ko03019 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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