Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g16864.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000010:2303728...2311715
NR annotation: CAH3110230.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A7SWH1	Pescadillo homolog OS=Nematostella vectensis OX=45351 GN=v1g194255 PE=3 SV=1
Q3B8N8	Pescadillo homolog OS=Rattus norvegicus OX=10116 GN=Pes1 PE=2 SV=1
Q7ZY69	Pescadillo homolog OS=Xenopus laevis OX=8355 GN=pes1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF06732	Pescadillo_N	Pescadillo N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR010613	Family	Pescadillo	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12221	PESCADILLO - RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0000463	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0070545	Cellular Component	PeBoW complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14843	PES1, NOP7; pescadillo	-	Ribosome biogenesis	ko03009	deepkoala