Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g17262.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000010:6366200...6376845
NR annotation: XP_027049181.1, uncharacterized F-box/LRR-repeat protein C02F5.7-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g17262.t1

ATGAAATTTGATAAATACGCAGATGAGCAACAGTCTCCAAACTTACAAAAACTCAAAATTCTTCATCACCAGAAACTTAATTGTGGTTTATCGGAAATAGCTCTTGTAGCAAATGGGTCCGTTGTAACAGCTAGTCCAGAAGAAGAGATACCTAAAAAAGACACAAAACCTACAAGCTCTGCAACACTGATACAAAAAGCCGAAGAATTTTGCCGAAAAACCCGTGTAGTTGCCAACAAGTGCAAGGTTTTTGTTGGTAACGTTAGCTACAGAGTGAAGTCCAGAGAACTGAAGGAATTTTTCACCTCTTTTGGAAAAGTTATATATGCCCAAATCATCACGGATCGTATGAAAAAACGTTCTCGGGGGTTTGGATTTGTGACCTTTAGTAATGAATGGGAAGCACAGAAAGCCAAAGATTCTTCAGATGATGAGAGAACTTTAGAAGGAAGAGTCATGAAAGTTTGCACTCCAGAAAGAAGGAAGAAAGGTTCTAAAAATTTCATTCAGGAAAGCACTATTGAGGAGGCACTTGAATCTTATCGTGAGAATGGAAATGGCAGGAAGGAAGCTGGTGACGAGGCAATGGAATCTTGTGATTGCACTATCAGTGGATCCAATGAACTCAGGTCTTTGCCAGAAATTTTTAAACTGAATGAGTACACCATGCTCCACATCTTCTTGTATTTAAGTCCTAAGGATAGGATCAGGATTGAAAGAGTATGCAGAAGATGGAGACTACTGGCCATTAAGTCATGGCATCGCATAACCCATCTTGACTTCCAAGGAGTGTTCACATCATTTAAAGGCATGGGAGGCCTTACTGATGAAGTTCTGTGGTCCATTTTAAGACGAGGATGCCAGAATCTGACTTCTCTTGACTTGTCCCAATCACCTCACTTCTTGACAGAATTTGCAGTCCTTTGTATTGGCAAACAATGCAAGTTGTTGACAGAGCTTGATTTAAGTGGAGTTAAAGTTAGTACATCATCATTAAAGAACTTGTCCCAAAGCTGTAAACAATTAGAGAAAATTACTCTTCATAGATGTCACAGAGTTGGCGAAAAAGCACTCTGGTGGCTCTTCAAGAATTGTCAAAAACTGCGTCATGTCAATTTGGAGGGAAACAAAAGTGTGAGGGGACAGTGTTTCTTTATGCTACCACCAGCTTGTGAAAATTTGTACCTGAAAGATTGCACTCAGTTGACAGACAAAGGAATGATATACATTGGAGATAAATGTAAAAACTTGAGAATCATCAATGTATCAGGCTGTATCACTTTGACTGATGAGGGCATCCTTCAGTTGACACAGCACTGTTGTATGATAGAGTCATTAGTTTTCTCACAAGCAGGACACAATGTGACTAGTCAAGGACTACAGAATATTGCTAATTTGTCATTGCTGAAAGAGTTGGATCTATCAAAGAATGCTGTGGTCAACGATGAGTTGCTGTTTAGCATTGGAAGAAGTTGCATTCATTTGAAGTTTCTCAACTTGGACTCCTGTGAAGGAGAAATAACGGATGCAGGATTACAGTGCTTGATCTCTTGTTATCAGTTATTTTCTCTTGTCATCAGCTACTTAACAAGGATTACAGACGAGAGTGTAATACACTTGTCCTCTAACGGAACCTTGGAGAGGCTGGTGGCTAGGGCGTGCCCAGGACTCACGGACAAATCTATCGAGAGTCTGTTACAAAGTTGTGGCCAATTGACTATTCTGGACGTTAGTGGCTGTAGTGGAATCACCAACGCCTCTCTTGAGCTGCTGAGTCTGCATTGCATATCAGAGGACCGACCCGTCATCAACTGCACCGTTGGAGGTACAGCCATAGACGAAGAAGCAATAACTCGATTTCGGGAGACATCTTATCGATGCTTTGTGTTTTGCATCGACTATTCTGTTAATCCAAGGATTGATGCTGTTCCGTCCCATGGTTCAGGAGCTTTCTTCCGCGAAGAAGACGATGACGAGTTTGATGAATTTGATGATGAGTTCGATGATGAGGATGAAGAAGAACATGAACATTTTCATAACATTGTTGACGATGAAGAGACTTGGATGGCCGAGGACTCATTATGGTGGCGACCAGGCGATGCCGAAGATTTCCTGGAGGCCGATTATCCTTCGTTACTGGCGGAACAACTGTACAGATCGTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g17262.t1

Protein

Uniprot

Uniprot term	Description
Q09299	Putative RNA-binding protein EEED8.10 OS=Caenorhabditis elegans OX=6239 GN=fbxl-3 PE=4 SV=3
Q9EPX5	F-box/LRR-repeat protein 12 OS=Mus musculus OX=10090 GN=Fbxl12 PE=2 SV=1
Q9NXK8	F-box/LRR-repeat protein 12 OS=Homo sapiens OX=9606 GN=FBXL12 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala