Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g18136.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000023:1564801...1590392
NR annotation: CAH3163126.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g18136.t1

ATGCCCCTCCCATCCCAAGTTATAATGTGTTGGAAGGCAATGCTGGTGATACACAAACTGCTAAGAGAAGGACACCCAAATGCTTTGAAGGAATCCCTTAAATACAAGCAGATGCTGAAGGACATGAGAGATTTTTGGAAACATTCAACAAAGGGTGGATATGGCTGGTTAATTCACAGTTACCTTACAATCTTGATAGCAAAACTGGAGTTCCATCAGAAGAATGAAGCTGTCCCTGGTACACTTCGAAATAGTGATGGTGGACCACTTGTCTACACTGGGACAGATGTAAATGCCTATTTTGAGTTGTCAATAGACATTTTTGATTATATGGACACATTAGTGGATCTTGAGAAAAAAATCTTCAGCACTCTTGATCCATTCCGTGCTAATTCTCAACTTCAGGCTGTGCAGTGTAGGATTTGTCCATTCCCTGTTGTCATTCAGGAGTGTGGTGGCCTTTATGACATTGCGGTGGATTTAATGTATAAACTACATGCAAGCTTACCAGCAGACACTCTGACTGGCCACAGAGAGAGGTTTTACTCTCACTTTGCTGAATTGAAGAAATTCTTCTTTGATGCTGGAAACATGGCGTATGTAAAAGCTTTGGTTCCTATTCCAGTGCTACCTCAGAATCCTCCCTCTTTCACATTATCTGATCCCAAGCCAACTTTGATGAGATCCACTAGTGAGGAAGTGCCAAGGCGTAAGTCAACTCCAGCTGAAGATTTCAAGCGCCAGAGCCTTATGGAGCCACTTAATATACCTGTTACAATGGAGCCATTACTTCAGACAACTCCTCAGACTCCAGAGGCTAATATGTTAGGAATTGACTCTTCAAATGGCCCTGCACCTGACAACAGGGACCTGATAATCAATCAGTTGCGACAAGAGATTGCACAACTAAAGCTGGTATTAGAGCGTCAACAGAAAGATGCAAAAGCACTTGAAGATTCTCTACGCTCCCAGATTGCAAGGCTGACTGAAGAACTAAATGAGTACAAGAAAATTGCAGAGAAAGCTTGTGAGGAGAATGTTTCGTTAAAGAAAGACCTAGAAAGCAAAGAGGATGACAAGAAAGATCAGAAAGGTCCAGCAGAAGAGAAATATACCAAACTCAAAGGAATTTACAGTAAACTGAGAGAGGAACACATCCAGCTCTTGCGAACTAATGCTGAAGTGAAGCAAAAATTGAATGCTTCAGAAAAGGACAAAGAGGAATTAAGTCAAGTAAACGAAAAACTTCAACAGGAAGTAGATGATAAGTCCACAGAACTTTTACAAGTGTTTCAGAAAGCGGAAATGGCCGAGGAGGATGGGAAGAGAGCGGGTGATGAGATGGCAAGACTGAGGAAAGAGCACGATGAAAAGATGGCCACACTAATGGCCGAGCTCCAGGCGTTAAGAAAAGAAAAAGGAGAAACAGAAGAAGCGAAGAAAATTGCTGATGAACAAATAGAGGCCATGAAAAAAGATCACGAGGAAAAGATTGGAACACTTAGCAGCGATTTATCAAGTTTTCGGAAGAGCTGGACAGATGAAGAGCTGGCAAAGAAAACTGCTGAGGAAACGATTCAAAGAGAAAGACAGGAGCATAAAGACAAGATTTCGACTCTTGCGGAAGAGATAGAGGCTTTGAAGAAAGAAAAAGGTGAAACAGATGAGGCCAGAAGAATCGCCGAAGAACAAATAGAAGCAATGATAAAAGATCACGAGGAAAAGGTTACAACGCTTAGCCGAGAGCTTTCAGATGTTCAAAAGAGTAGGACAGTTGAGGAGGAGGCGAAACGAACAGCCGAGGAAACTATAGAGAAAGAAAGAAAGAGACATGAAGAAATGCTAAATGAGCTTGAAAGAAAAAGACTTGAAGATATCTCTAAAGAAAAGTACGACTTAGTAGGAACGGCGATAGTGTCAGCAGAAAGAACAATCCAAGATGCTTTAGATCAGTTTCAAAATCCGAAACACAGTTCTACGACTTGTACTGCAGATTACTTGCTAAGTAGAATCGAGAGCCTTCCAGGAGTTGTTGACGAGCTTAATTCGAAGTTTGCATCTTATAAAAAAGATCACAAAGATGCCATTCCCTGTATATGCTGTCTTGGTTCGTTCTCACATCAGCTCAGTGATTGTATCTTAAATGCCAAGGCTACCTCTCACATGGCACCTACTCAAGAAGCTGAAGATCTTCGGTCACTCGGCGAATCTGCTGGTAGAGCTTCTCTCGAACTGTTGCAACTCTACAAACAAAGTGATCCGGATCCAAATGTTCTTGCCGACAAGCTGAATGCCGTAAAAAAATACATCTCAGATATTACCAAAGTTGCTGAGGCTCTCGCGCCCAAAGAAAAAGACGGTGTTGATAGTATAGGTGGAGAAGTAGACGATGAAATCAATGCTACTGCAGAACTTGTCGCAGATTCAGCGGCCAGGATTCAGGAAATGATCAATCAAACAAGGGAGAAATACAGTGGTGTACAACTTGAAGTGAACGGAAGAATTTTAGATTCCTGCACGGCACTGATGGAGGCAATCAAGAAATTGATAATGAAGTCTAAAGTATTGCAAAAGGAGATTGTCGACGAGGGCAAGGGTCAAGCAACAGCTAAAGAGTTTTACAAGCGTCACCACCGCTGGACGGAGGGGCTTATCTCCGCCGCGAAAGCTGTTGGTTGGGGAGCCAAAGTGCTTGTTGACTCCGCTGACAAAGTTGTTCAGGGGGGAGGCAAGTTTGAGGAAATAGTTGTAGCATCCAATGAAATTACAGCAAGTACAGTGCAGCTGGTGGCTGCATCGAGAGTAAAGGCTCGACAAGCCAGTACAGGTTTAGCTGCTCTGCAAGGGGCCTCCAAAAATGTGGTTGAGTCAGCGGCTGGTGTGGTGGCATCTGCTAAAACAGGAGCTGAAATGATAGAAGACAGTAAAGCCGTACCAGATTACACCAAGCTAAGTCTCACCCAGGCTAAGAGATTTGAAATGGAGTCACAGGTTCGGGTTCTAGAGCTTGAAAGCCAGCTGACTAAAGAACGAGGGCCTGGACCCCGAGTAATAAGGACGAAGCAAGGTCGTCTGCAAGAGGGATCCAGTCATCTCGAATCATAG

Transcript

Pocillopora_acuta_HIv2___RNAseq.g18136.t1

Protein

Uniprot

Uniprot term	Description
Q9JKY5	Huntingtin-interacting protein 1-related protein OS=Mus musculus OX=10090 GN=Hip1r PE=1 SV=2
O75146	Huntingtin-interacting protein 1-related protein OS=Homo sapiens OX=9606 GN=HIP1R PE=1 SV=2
O00291	Huntingtin-interacting protein 1 OS=Homo sapiens OX=9606 GN=HIP1 PE=1 SV=5

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01608	I_LWEQ	I/LWEQ domain	Family	Interproscan
PF07651	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013809	Domain	ENTH domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR035964	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR030224	Family	Sla2 family	Interproscan
IPR002558	Domain	I/LWEQ domain	Interproscan
IPR011417	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0030136	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0030479	Cellular Component	actin cortical patch	Interproscan
GO:0032051	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268	Biological Process	clathrin coat assembly	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0080025	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04559	HIP1; huntingtin interacting protein 1	-	Membrane trafficking	ko04131	deepkoala