Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g19158.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000004:2396072...2399147
NR annotation: CAH3036069.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g19158.t1

ATGATCTGTAAAAAGTTGCTCGACAACCTTATTCGCAAGAAGCCGCGTGAAGCATGGCTCCCAGAAATTCCCCTGAGAAGATGCTTGACAGCCATAGACCTCATCTCCTTAGGTGTTGGAACAACAGTCGGCACTGGCCTATATGTGATCATTGGTGAGCTTGCTCGGTCTGTCGCTGGTCCTTCAGTCATTCTCTCTCTCCTCCTGGCCTCCAGCGCTGCGTTTTTGTGCGCCCTTTCATTCGCTGAATATGGTAGCCGATTTCCTGATGCTGGATCTTCATATCAGTACACTTATGCCACCCTCGGTGAAATATCTGCGTTCATTGTTGGCTGGAATGTTGCTCTGGAGTTTTTAATCGCGGGAGCTAGTCTTGCACGAACTTGCAGCAGATTCATAGATTATGCTTCTAACGGACAGGTGTTCCTCTTCTTATCCAATCATTTTTCAAATTACTGGAGCATTCCCGGAGAAGAGCCCTTTCCAGATCTGCTGGCAGCTGCCTTAGTAGTCGCAGTAATGGTTATTTTGTGTTTGGGAGCTCGCACCTCCTCAAATTTTCACAATTTAGTGACAGTCATAAACTTAGGATTTATCCTCTTTATAATCGTTTTTGGATTCTTCTTCGTAAACTTAAAACACTGGAAAGACAATTTCATCCCTTACGGCGTCTCAGGTGTACTGGAAGGTGCAGCGGGGGCTTTCTTCGCCTTCTCCGGATTCGACATTGTCGCAGAGGCCGCTGAAGAAGCGGTAGACCCTGAGAAAAATCTCCCCAAGTCATTCTTTATCACCATCCTACTCAGTACGTTGGCCTATATAAGTGTAGCTTCAGTACTCACTCTCATGGTACCTTATTATGACTTAGATGAGTACACACCATTGGCAGAGGCCTTCGGGCGTAAGACCTTTCCTGGTGCTATGTACATTGTAGTGTGCGGAGGTATCTCTGCTACTGTCAGTGCATTACTCTGTGCAGTTTATTCCACTTCAAGAATTTTTTACTCCATGTCTGTTGACGGGCTGTTGTTCAGATGGTTTTCCAAAGTGCATAGCAAAACCCAGGTACCCTACAGAGCTACACTAATTTCTGGTATCATCACCGCCTTGATAGCACTCCTGTTTGACGTAAATCAAATGGTGCAACTCCTTTCTATTGGAACCTTGGTGGCTTACACAAAAGTTAGCATCTCTGTTCTTGTCAGTCGCTTTCAGTCTGGAGTACAAAGTGTTCCTGAAAATGATGAAGGAAATACAAACATAACTCAGTGGCTTCATAAAATGTTCTCCAAGGCTAAAGGGAAAGAAAGTGATCCATCAAGCATTGCATATCAGCGAGTACCAGATGAGGAAGATACGTCCAGTCTTCCAGCAGCTCCCGGGGCTGAAGTCACTGAAGCAACAACATTTCGTGCAGAACTAGCTGTATTTTTCCTTGTGATTTTTTTGGCAGCATTGGCTTTGATTTTAAGCAATTTTTATCAAGACGTGTTCATAAAAGGTGAATGGTGGGCTATATTTCTCGTCACTCTGTTTTCAGGAGCAATTGTCTTTCACCTTTTTGTTATCCAGCTTCAACCAAGGAACTGTGCGACGTTTCCGTTTATGGTTCCTGGTGTTCCTTATATTTCAGCATTAACCATTTTCATCAATGCTCTGTTGATGGCAAATCTTCAATGGATGACCTATGTTCGCTTTGGCGTTTGGATGATATTAGGTTTTGTCATCTACTTATTTTATGGATATCGGCATAGCACAGAAGCACTGCAACCAGTCGTCAAGGAGATAGATGATTTAACATTAGAGATTCCAGATGTCGGACGAGAGATAACAAGGCCTCAACCAGTCGTCAAGGAGATAGATGATAAAAAATTAGAGATTCCAGAGGTCGGACCAAAGGTAACAAAGCCTCAACCAGTCGTCAAGGAGATAGATGATAAAACGTTAGAGATTCCAGAAGTCGGACGAAAGATCACAAAGCCTCAACGACCGTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g19158.t1

Protein

Uniprot

Uniprot term	Description
O43246	Cationic amino acid transporter 4 OS=Homo sapiens OX=9606 GN=SLC7A4 PE=1 SV=3
Q8BLQ7	Cationic amino acid transporter 4 OS=Mus musculus OX=10090 GN=Slc7a4 PE=1 SV=1
B5D5N9	Cationic amino acid transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc7a2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13906	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029485	Domain	Cationic amino acid transporter, C-terminal	Interproscan
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13866	SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4	-	Transporters	ko02000	deepkoala