Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g19215.t1b in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000004:3095742...3098337
NR annotation: XP_027055468.1, TAR DNA-binding protein 43-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5R5W2	TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1
Q13148	TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1
Q28F51	TAR DNA-binding protein 43 OS=Xenopus tropicalis OX=8364 GN=tardbp PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF18694	TDP43_N	TAR DNA-binding protein 43, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR041105	Domain	TAR DNA-binding protein 43, N-terminal	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23600	TARDBP, TDP43; TAR DNA-binding protein 43	-	Messenger RNA biogenesis	ko03019	deepkoala