Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g1968.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000387:6038629...6049490
NR annotation: XP_027057923.1, harmonin-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9P202	Whirlin OS=Homo sapiens OX=9606 GN=WHRN PE=1 SV=4
Q80VW5	Whirlin OS=Mus musculus OX=10090 GN=Whrn PE=1 SV=3
Q810W9	Whirlin OS=Rattus norvegicus OX=10116 GN=Whrn PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21219	USH1C_N	Harmonin, N-terminal domain	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR030237	Domain	Harmonin, N-terminal	Interproscan
IPR051844	Family	Sensory Perception USH2 Complex Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23116	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21877	USH1C; harmonin	-	Cilium and associated proteins	ko03037	deepkoala