Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g19799.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000388:3403611...3408681
NR annotation: CAH3129524.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2P8	RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens OX=9606 GN=RCL1 PE=1 SV=3
Q9JJT0	RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus OX=10090 GN=Rcl1 PE=2 SV=1
Q2KHX8	RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus OX=9913 GN=RCL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016443 all species →	Family	RNA 3'-terminal phosphate cyclase type 2	Interproscan
IPR000228 all species →	Family	RNA 3'-terminal phosphate cyclase	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR020719 all species →	Conserved_site	RNA 3'-terminal phosphate cyclase-like, conserved site	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096 all species →	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11108	RCL1; RNA 3'-terminal phosphate cyclase-like protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.