Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20370.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000023:481209...493224
NR annotation: CAH3162194.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q90YB1DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
Q8BTF7DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2
G3GTP0DNA ligase 4 OS=Cricetulus griseus OX=10029 GN=LIG4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF11411DNA_ligase_IVDNA ligase IVFamilyInterproscan
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF16589BRCT_2BRCT domain, a BRCA1 C-terminus domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044125DomainDNA Ligase 4, adenylation domainInterproscan
IPR001357DomainBRCT domainInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR021536DomainDNA ligase IV domainInterproscan
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR029710FamilyDNA ligase 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10777LIG4, DNL4; DNA ligase 4EC:6.5.1.1
DNA repair and recombination proteinsko03400deepkoala

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