Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20496.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000023:1824055...1832361
NR annotation: CAH3143577.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6GNS3	60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1
Q6P2Z6	60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1
Q5BLF0	60S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04981	NMD3	NMD3 family	Family	Interproscan
PF21193	NMD_SH3	NMD3 SH3 domain	Domain	Interproscan
PF21192	NMD3_OB	NMD3 OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007064	Domain	Nmd3, N-terminal	Interproscan
IPR048899	Domain	60S ribosomal export protein NMD3, SH3 domain	Interproscan
IPR039768	Family	Ribosomal export protein Nmd3	Interproscan
IPR048898	Domain	60S ribosomal export protein NMD3, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12746	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07562	NMD3; 60S ribosomal export protein NMD3	-	Ribosome biogenesis	ko03009	deepkoala