Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20526.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000023:1977477...1981592
NR annotation: XP_027038423.1, roquin-1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
P0C090Roquin-2 OS=Mus musculus OX=10090 GN=Rc3h2 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF18386ROQ_IIRoquin II domainDomainInterproscan
PF14634zf-RING_5zinc-RING finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR041523DomainRoquin IIInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

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