Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20532.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000023:2021088...2027525
NR annotation: CAH3143651.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P20965Polyadenylate-binding protein 1-A OS=Xenopus laevis OX=8355 GN=pabpc1-a PE=1 SV=3
F1QB54Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=pabpc1a PE=1 SV=1
P29341Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00658PABPPoly-adenylate binding protein, unique domainFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036053Homologous_superfamilyPABC (PABP) domainInterproscan
IPR006515FamilyPolyadenylate binding protein, human types 1, 2, 3, 4Interproscan
IPR002004DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan
IPR045305DomainPABP, RNA recognition motif 2Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034364DomainPABP, RNA recognition motif 1Interproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24012RNA BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003730Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008143Molecular Functionpoly(A) bindingInterproscan
GO:0008266Molecular Functionpoly(U) RNA bindingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13126PABPC; polyadenylate-binding protein-Spliceosomeko03041deepkoala

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