Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20680.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000024:65749...75028
NR annotation: CAH3039353.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O66515Ammonium transporter OS=Aquifex aeolicus (strain VF5) OX=224324 GN=amt PE=1 SV=1
P54147Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0108 PE=3 SV=1
O28528Ammonium transporter Amt2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005807 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00909
all species →		Ammonium_transpAmmonium Transporter FamilyFamilyInterproscan
PF00023
all species →		AnkAnkyrin repeatRepeatInterproscan
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR029020
all species →		Homologous_superfamilyAmmonium/urea transporterInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR024041
all species →		DomainAmmonium transporter AmtB-like domainInterproscan
IPR001905
all species →		FamilyAmmonium transporterInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43029
all species →		AMMONIUM TRANSPORTER MEP2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008519
all species →		Molecular Functionammonium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0072488
all species →		Biological Processammonium transmembrane transportInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03320amt, AMT, MEP; ammonium transporter, Amt family-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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