Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20810.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000024:1810369...1842604
NR annotation: CAH3137819.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7Z442Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5
P98161Polycystin-1 OS=Homo sapiens OX=9606 GN=PKD1 PE=1 SV=3
O08852Polycystin-1 OS=Mus musculus OX=10090 GN=Pkd1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12248Methyltransf_FAFarnesoic acid 0-methyl transferaseFamilyInterproscan
PF02010REJREJ domainFamilyInterproscan
PF01822WSCWSC domainDomainInterproscan
PF00801PKDPKD domainDomainInterproscan
PF15711ILEIInterleukin-like EMT inducerDomainInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF00059Lectin_CLectin C-type domainDomainInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022041DomainFarnesoic acid O-methyl transferaseInterproscan
IPR002889DomainCarbohydrate-binding WSCInterproscan
IPR035986Homologous_superfamilyPKD domain superfamilyInterproscan
IPR002859DomainPKD/REJ-like domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000203Conserved_siteGPS motifInterproscan
IPR000601DomainPKD domainInterproscan
IPR046338Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR042060DomainPolycystin-1 like, PLAT/LH2 domainInterproscan
IPR039477DomainILEI/PANDER domainInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR000434FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR022409DomainPKD/Chitinase domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR046791DomainPolycystin domainInterproscan
IPR051223FamilyPolycystinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0050982Biological Processdetection of mechanical stimulusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04988PKD1L2; polycystin 1L2-Ion channelsko04040deepkoala

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