Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20836.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000024:2126105...2135815
NR annotation: CAH3137765.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P26368Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF2 PE=1 SV=4
P26369Splicing factor U2AF 65 kDa subunit OS=Mus musculus OX=10090 GN=U2af2 PE=1 SV=3
Q24562Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR006529FamilyU2 snRNP auxilliary factor, large subunit, splicing factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23139RNA-BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0008187Molecular Functionpoly-pyrimidine tract bindingInterproscan
GO:0016607Cellular Componentnuclear speckInterproscan
GO:0030628Molecular Functionpre-mRNA 3'-splice site bindingInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0089701Cellular ComponentU2AF complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12837U2AF2; splicing factor U2AF 65 kDa subunit-Spliceosomeko03041deepkoala

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