Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20840.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000024:2218365...2222596
NR annotation: CAH3137739.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O76021	Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3
Q5RCE6	Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 SV=2
A4FV97	Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005475 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00687 all species →	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016095 all species →	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR050257 all species →	Family	Eukaryotic ribosomal RNA-processing and assembly protein	Interproscan
IPR023674 all species →	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR028364 all species →	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23105 all species →	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14775	UTP30, RSL1D1; ribosome biogenesis protein UTP30	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.