Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g20864.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000024:2542363...2551109
NR annotation: CAH3137679.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q13098	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10602	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF01399	PCI	PCI domain	Domain	Interproscan
PF21151	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019585	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR045135	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR048624	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008180	Cellular Component	COP9 signalosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala