Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g21328.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000031:1562355...1575226
NR annotation: XP_027049380.1, low-density lipoprotein receptor-related protein 4-like isoform X2 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g21328.t2

ATGGCAAGATCGTGGAGGAACGTGATCAAGCTTTTGGTCTGTGTGTGTATCGCTTTGGATTTTGCTCAAACAATAGTTGCAGAGTTTCGATGTGGTAAAGATCAGTTTGCTTGTGGCAATCAGTTATGTATTCCTGAAAATTGGAGATGTGATGGAGAAGATGATTGCGGAGATAACTCCGACGAGAAGAATTGTCCTGTTAGACATTGTGATCTAAGCACAAACTTTGCGTGCAAAACTGTAGACCGTTGCATTCCTCTGAGATGGGTGTGCGATCTCACTGATGATTGTGGGGATAATTCTGACGAACCTGCAAACTGTGCCCAAAGAAAATGTTCAGAGAATGAACATGCATGTGGAAATGGTCATTGCATTCCAATGCGGTGGCGCTGTGATCGGGACAAGGATTGTAATGATGGTAGTGATGAACGAAATTGTGGACCAATTTCTTCAGGTAACAAGACTTGTAATGGTAATGAGTTTACCTGTTCAAATGGCAAGTGTATCTCGCGTAGCTGGCGGTGTGATCTTGATGACGACTGTAAAGATAACTCTGATGAAAAAAATTGTCCTAACAAGACATGCAACCCAACAGAGTTTACTTGTAACAGTGGACGGTGTATAAAGGGGTCCTACAAGTGTGATGGGGACAATGATTGTCAGGATGGCTCTGATGAAATTGGCTGTCCAACCACTGGTCCTGTGTGCAAGCATAGTGAATTTCAGTGCAATTCTCATGACTGTGTTCATGAAAGTTGGGTATGTGATGGAGAAAATGATTGCAGTGATGGCTCAGATGAGAACGGATGCAATGTTACCTCCTGTGGTTCTAATGAGTTCAGTTGTACCAATGGGAGGTGCATATCTATTCACTCACATTGTGATGGCAAAAATGACTGTTTAGACAACTCAGATGAGCGGAATTGTGCTCCTGTAAAACCAAAGCCTTGCAAGGATGATGAATTCCAATGTGGTGAAACAGACCAATGTATTCCATACAGTAAAGTTTGTGATGGTAATGAGGACTGCAAGAATAAGTTGGACGAACCTTTTACTTGTTCAATTAATGAATGTATTGATCACAATGGCCATTGTCAACAAATCTGCAATGATACCAAAACATCTCACTTCTGCTCCTGTCGTCCGGGCTTTGAAGTAGATAAGGAAGATCCAAGAATTTGCAGAGATAAGGACGAGTGTGAAATTCCAGGGTCGTGCAGCCAAACTTGTTACAACACAAAAGGAAGTTTCAAATGTTATTGCCGAAGTGGGTATGAACTGGAGCCAGATCGCCGAACCTGTAAAGCGATAGGTGAATCAGGCTTCCTCATTTTTGCCAATCGTCAAGACATTCGCCGCCTCTTGTTTGATTCCTCTGACTACACAGAAATGGTACCAGAGCAGCGGGGTGCTATAGCGTTAGACTATGACTTTGAAAGTGGGTACATATTCTGGACAGATGTCATTGATGAAAATATCAGGCGAACTAAGATGTATGACAGTTCTGTAGTTGAAGACTTGGTGGAGATAAACCTCCATACACCAGATGGAATTGCTGTAGATTGGATTAACAAGAAGTTATATTGGACAGACACTGGTGTAGACATGATTGAGGTATCTGATTTTGATGGCAAGAATCGTCTTCAATTGGTAACAACAAATCTGGAGGAACCAAGAGCTATTGTTGTGCATCCTTCTCTTGGGTTTATGTTTTGGACTGATTGGGGTGATAAGGCAAAGATTGAAAAGTGCGGAATGAATGGAGACCTTGAAACAAGGCTGGAGATAGTTAATACCAGTATCCTGTGGCCCAATGCACTTGCAATAGATTATACTGTTGACAGAATTTGGTGGGCAGATGCAAAACTCCACACTATAGAATCATCAGATTTAAATGGAGGAAACAGACGGCTGGTGTTGAGTGAGAACATCAACCATCCATTTGCATTGACTATTTTCCAGAGCTACATTTATTGGACAGACTGGCATCTTAATGCAATCCACAGGGCTAATAAATTTACTGGTGAAGAGAGATCTATTGTGATGGAGAATCTGTATTCACCAATGGATATTCATGTCCATCATAGACAGCGACAACCTATAGGAATGAATCCATGCACTGTTGTGGCAGAGTATGGCGGCTGCAGCCATATTTGTTTATTAGCTCCCAAAATTAAAAAATATCCAGATGGTTTCTCCTGTCACTGTCCCTCTGGTATTAATCTGCTTTACGATCACAGGACCTGCAATACAACAGATGCTTTCAATTGCACAGATACAACATGTCATAATGGTGGAACATGTGTAATAAAAGAGGAAGGGGCATTACCATCTTGCGAATGTACTTACGAGTTTACAGGAAAGGATTGTAGCATAAAACGCAGCCTACCTCCTTTCACTGCCAGTCCCACATATACTACACCTGGAATGAGAGGATTGCAAGAACTTAAAGGAGAGGATGCTGGTGTCACAGCAGCAATATCAGTTGCTGTGGTAGTAGTCCTTTTAGCTCTGGGTGGCTTGATCGGATGGCTAGTTTACAGAAGAATACGTAGAAACAATCTTAGATCAATGAGTTTTGATAACCCTGTGTATAAGAAAACTACTGAATCTAATGGCTCACTGGATAGAATAAGTATAAGATTTGGTCATTCTCACGGAAAATGTCAGTCATTATTGAGCTCATTCCGGAATGAAGTTGAAATTCACAGTTGCTAG

Transcript

Pocillopora_acuta_HIv2___RNAseq.g21328.t2

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
Q924X6	Low-density lipoprotein receptor-related protein 8 OS=Mus musculus OX=10090 GN=Lrp8 PE=1 SV=2
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20053	VLDLR; very low-density lipoprotein receptor	-	Membrane trafficking	ko04131	deepkoala