Detailed information of Pocillopora_acuta_HIv2___RNAseq.g21351.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000017:48738...50104
NR annotation: RMX57696.1, hypothetical protein pdam_00004963 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3ZCE0U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3
O95777U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3
Q6ZWM4U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044642FamilyU6 snRNA-associated Sm-like protein Lsm1/8Interproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR034103DomainSm-like protein Lsm8Interproscan
IPR047575DomainSm domainInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15588LSM1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12627LSM8; U6 snRNA-associated Sm-like protein LSm8-Spliceosomeko03041deepkoala

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