Genomic Location: Pocillopora_acuta_HIv2___Sc0000017:1620435...1657880
NR annotation: CAH3113006.1, unnamed protein product [Pocillopora meandrina]
| CDS | ||||
| Pocillopora_acuta_HIv2___RNAseq.g21479.t1 | ||||
| Transcript |
| Pocillopora_acuta_HIv2___RNAseq.g21479.t1 |
| Protein |
| Pocillopora_acuta_HIv2___RNAseq.g21479.t1 |
| Uniprot term | Description |
|---|---|
| M9NDE3 | Protein bark beetle OS=Drosophila melanogaster OX=7227 GN=bark PE=1 SV=1 |
| Q5DRE0 | Protocadherin beta-1 OS=Pan troglodytes OX=9598 GN=PCDHB1 PE=3 SV=1 |
| Q767I8 | Protocadherin alpha-4 OS=Rattus norvegicus OX=10116 GN=Pcdha4 PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00530 | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| PF00028 | Cadherin | Cadherin domain | Domain | Interproscan |
| PF00094 | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| PF13229 | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR000998 | Domain | MAM domain | Interproscan |
| IPR001190 | Domain | SRCR domain | Interproscan |
| IPR036772 | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR011050 | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR017448 | Domain | SRCR-like domain | Interproscan |
| IPR006626 | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR002126 | Domain | Cadherin-like | Interproscan |
| IPR012334 | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR015919 | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR020894 | Conserved_site | Cadherin conserved site | Interproscan |
| IPR001846 | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR001304 | Domain | C-type lectin-like | Interproscan |
| IPR053243 | Family | Septate junction maturation regulator | Interproscan |
| IPR039448 | Domain | Right handed beta helix domain | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47653 | PROTEIN BARK BEETLE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0007155 | Biological Process | cell adhesion | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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