Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g21875.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000011:2408021...2416760
NR annotation: CAH3139999.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5U4F6	Cytoplasmic dynein 2 intermediate chain 2 OS=Mus musculus OX=10090 GN=Dync2i2 PE=1 SV=3
Q96EX3	Cytoplasmic dynein 2 intermediate chain 2 OS=Homo sapiens OX=9606 GN=DYNC2I2 PE=1 SV=2
E7F6H7	Dynein, cytoplasmic 1, intermediate chain 2a OS=Danio rerio OX=7955 GN=dync1i2a PE=3 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050687	Family	Dynein Intermediate Chain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0045503	Molecular Function	dynein light chain binding	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan
GO:0097014	Cellular Component	ciliary plasm	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22868	WDR34; WD repeat-containing protein 34	-	Cilium and associated proteins	ko03037	deepkoala