Detailed information of Pocillopora_acuta_HIv2___RNAseq.g22518.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000016:3533664...3555479
NR annotation: XP_027053974.1, gem-associated protein 5-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8TEQ6Gem-associated protein 5 OS=Homo sapiens OX=9606 GN=GEMIN5 PE=1 SV=3
Q8BX17Gem-associated protein 5 OS=Mus musculus OX=10090 GN=Gemin5 PE=1 SV=2
Q54IY5Component of gems protein 5 OS=Dictyostelium discoideum OX=44689 GN=gemin5 PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR052640FamilyWD repeat domain-containing protein Gemin-5Interproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46362GEM-ASSOCIATED PROTEIN 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0003730Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0032797Cellular ComponentSMN complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13133GEMIN5; gem associated protein 5-Spliceosomeko03041deepkoala

TOP